miRNA display CGI


Results 1 - 20 of 211 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28277 3' -36.1 NC_005902.1 + 174933 0.66 1
Target:  5'- -aUUAACUCCUAAAa---UAUCAuUGa -3'
miRNA:   3'- gaAAUUGAGGAUUUcauaAUAGUuAC- -5'
28277 3' -36.1 NC_005902.1 + 89200 0.67 1
Target:  5'- uCUUUAACUCCUAAAGcAUa------- -3'
miRNA:   3'- -GAAAUUGAGGAUUUCaUAauaguuac -5'
28277 3' -36.1 NC_005902.1 + 143953 0.67 1
Target:  5'- -cUUAACUCa--AGGcAUUAUCAAUGa -3'
miRNA:   3'- gaAAUUGAGgauUUCaUAAUAGUUAC- -5'
28277 3' -36.1 NC_005902.1 + 11669 0.68 1
Target:  5'- uUUUAACUCC--AGGcGUUAUCAAc- -3'
miRNA:   3'- gAAAUUGAGGauUUCaUAAUAGUUac -5'
28277 3' -36.1 NC_005902.1 + 23599 0.68 1
Target:  5'- cCUUUAACUUUUAAAGcAUUGUUAu-- -3'
miRNA:   3'- -GAAAUUGAGGAUUUCaUAAUAGUuac -5'
28277 3' -36.1 NC_005902.1 + 52519 0.68 1
Target:  5'- --gUAACUCCUcauuaaugaugcuAAGcAUUGUCAAUGa -3'
miRNA:   3'- gaaAUUGAGGAu------------UUCaUAAUAGUUAC- -5'
28277 3' -36.1 NC_005902.1 + 149499 0.68 1
Target:  5'- uUUUAAaUCCUAAGGcAUcAUCGAUGa -3'
miRNA:   3'- gAAAUUgAGGAUUUCaUAaUAGUUAC- -5'
28277 3' -36.1 NC_005902.1 + 20413 0.69 1
Target:  5'- -gUUAACUCCUAAGGc---AUCAuUGa -3'
miRNA:   3'- gaAAUUGAGGAUUUCauaaUAGUuAC- -5'
28277 3' -36.1 NC_005902.1 + 149347 0.69 1
Target:  5'- uUUUAACUCCUAAGGcUAgUA-UAGUGa -3'
miRNA:   3'- gAAAUUGAGGAUUUC-AUaAUaGUUAC- -5'
28277 3' -36.1 NC_005902.1 + 77645 0.67 1
Target:  5'- gCUUUGGCUCauaaacaUAAAGUAgcugAUCAAa- -3'
miRNA:   3'- -GAAAUUGAGg------AUUUCAUaa--UAGUUac -5'
28277 3' -36.1 NC_005902.1 + 67674 0.67 1
Target:  5'- cCUUUAACUUCUAAGGc---AUCAuUGa -3'
miRNA:   3'- -GAAAUUGAGGAUUUCauaaUAGUuAC- -5'
28277 3' -36.1 NC_005902.1 + 144113 0.67 1
Target:  5'- ----uACUCCUAAAacAUUGUUAAUGa -3'
miRNA:   3'- gaaauUGAGGAUUUcaUAAUAGUUAC- -5'
28277 3' -36.1 NC_005902.1 + 82105 0.66 1
Target:  5'- uUUUAACUCCaugu-UGUUAUUGAUGa -3'
miRNA:   3'- gAAAUUGAGGauuucAUAAUAGUUAC- -5'
28277 3' -36.1 NC_005902.1 + 114794 0.66 1
Target:  5'- cCUUUAACUCUUAAAGc---AUCAc-- -3'
miRNA:   3'- -GAAAUUGAGGAUUUCauaaUAGUuac -5'
28277 3' -36.1 NC_005902.1 + 154904 0.66 1
Target:  5'- cCUUUAACUCCaaacaUcaucaauaacauGAAGUAUUGUUGAUa -3'
miRNA:   3'- -GAAAUUGAGG-----A------------UUUCAUAAUAGUUAc -5'
28277 3' -36.1 NC_005902.1 + 26677 0.66 1
Target:  5'- -aUUAACUCCaugc-UGUUGUUAAUGa -3'
miRNA:   3'- gaAAUUGAGGauuucAUAAUAGUUAC- -5'
28277 3' -36.1 NC_005902.1 + 85654 0.66 1
Target:  5'- uUUUAACUUUUAuGGUAUcAUUGAUGa -3'
miRNA:   3'- gAAAUUGAGGAUuUCAUAaUAGUUAC- -5'
28277 3' -36.1 NC_005902.1 + 176189 0.66 1
Target:  5'- cCUUUAACUCUgcgc-UGUUAUCAAc- -3'
miRNA:   3'- -GAAAUUGAGGauuucAUAAUAGUUac -5'
28277 3' -36.1 NC_005902.1 + 36556 0.67 1
Target:  5'- -cUUAAC-CCUAAGGgGUUAUCGu-- -3'
miRNA:   3'- gaAAUUGaGGAUUUCaUAAUAGUuac -5'
28277 3' -36.1 NC_005902.1 + 113963 0.67 1
Target:  5'- cCUUUAACUUU----GUAUUGUUAAUGa -3'
miRNA:   3'- -GAAAUUGAGGauuuCAUAAUAGUUAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.