miRNA display CGI


Results 21 - 40 of 211 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28277 3' -36.1 NC_005902.1 + 163565 0.71 1
Target:  5'- cCUUUAACUCaacaUuaucauugaugacacAAAGUGUUAUUAAUGa -3'
miRNA:   3'- -GAAAUUGAGg---A---------------UUUCAUAAUAGUUAC- -5'
28277 3' -36.1 NC_005902.1 + 162467 0.95 0.895002
Target:  5'- uUUUAAUUCCUAAGGUGUUGUUGAUGg -3'
miRNA:   3'- gAAAUUGAGGAUUUCAUAAUAGUUAC- -5'
28277 3' -36.1 NC_005902.1 + 162134 0.75 1
Target:  5'- gUUUAcC-CCUAAGGUGUUAUUGAUGa -3'
miRNA:   3'- gAAAUuGaGGAUUUCAUAAUAGUUAC- -5'
28277 3' -36.1 NC_005902.1 + 161949 0.79 0.999999
Target:  5'- aCUUUAACUCCUAAGGcAUcGUUAAUa -3'
miRNA:   3'- -GAAAUUGAGGAUUUCaUAaUAGUUAc -5'
28277 3' -36.1 NC_005902.1 + 161775 0.78 1
Target:  5'- cCUUUAACaCCUAAGGUGUcAUUGAUGa -3'
miRNA:   3'- -GAAAUUGaGGAUUUCAUAaUAGUUAC- -5'
28277 3' -36.1 NC_005902.1 + 158167 0.97 0.834784
Target:  5'- cCUUUAAUUCCUAAAGUAUcAUCAAUGa -3'
miRNA:   3'- -GAAAUUGAGGAUUUCAUAaUAGUUAC- -5'
28277 3' -36.1 NC_005902.1 + 157919 0.77 1
Target:  5'- cCUUUAACUCCau--GUGUcAUCGAUGa -3'
miRNA:   3'- -GAAAUUGAGGauuuCAUAaUAGUUAC- -5'
28277 3' -36.1 NC_005902.1 + 156711 0.82 0.999948
Target:  5'- cCUUUAACUCUUAAGGcAUcAUCAAUGa -3'
miRNA:   3'- -GAAAUUGAGGAUUUCaUAaUAGUUAC- -5'
28277 3' -36.1 NC_005902.1 + 155028 0.78 1
Target:  5'- -gUUAAaUCCUAAAGaGUUGUCGAUGa -3'
miRNA:   3'- gaAAUUgAGGAUUUCaUAAUAGUUAC- -5'
28277 3' -36.1 NC_005902.1 + 154904 0.66 1
Target:  5'- cCUUUAACUCCaaacaUcaucaauaacauGAAGUAUUGUUGAUa -3'
miRNA:   3'- -GAAAUUGAGG-----A------------UUUCAUAAUAGUUAc -5'
28277 3' -36.1 NC_005902.1 + 154657 0.76 1
Target:  5'- cCUUUAACUUUUAAGGcAUUAUCAAc- -3'
miRNA:   3'- -GAAAUUGAGGAUUUCaUAAUAGUUac -5'
28277 3' -36.1 NC_005902.1 + 150210 0.76 1
Target:  5'- -gUUAACUCCUAAuGUGUcAUCAAc- -3'
miRNA:   3'- gaAAUUGAGGAUUuCAUAaUAGUUac -5'
28277 3' -36.1 NC_005902.1 + 150153 0.79 0.999999
Target:  5'- cCUUUAACaCCUAAGGUGUgGUUGAUGa -3'
miRNA:   3'- -GAAAUUGaGGAUUUCAUAaUAGUUAC- -5'
28277 3' -36.1 NC_005902.1 + 149499 0.68 1
Target:  5'- uUUUAAaUCCUAAGGcAUcAUCGAUGa -3'
miRNA:   3'- gAAAUUgAGGAUUUCaUAaUAGUUAC- -5'
28277 3' -36.1 NC_005902.1 + 149385 0.8 0.999998
Target:  5'- -aUUAACUCCUAAAaUGUcAUCGAUGa -3'
miRNA:   3'- gaAAUUGAGGAUUUcAUAaUAGUUAC- -5'
28277 3' -36.1 NC_005902.1 + 149347 0.69 1
Target:  5'- uUUUAACUCCUAAGGcUAgUA-UAGUGa -3'
miRNA:   3'- gAAAUUGAGGAUUUC-AUaAUaGUUAC- -5'
28277 3' -36.1 NC_005902.1 + 149032 0.71 1
Target:  5'- uUUUAAUUUCUAAGGcAUcAUCAAUGa -3'
miRNA:   3'- gAAAUUGAGGAUUUCaUAaUAGUUAC- -5'
28277 3' -36.1 NC_005902.1 + 148426 0.86 0.998148
Target:  5'- -aUUAAUUCCUAAGGUAUUGUUGAUa -3'
miRNA:   3'- gaAAUUGAGGAUUUCAUAAUAGUUAc -5'
28277 3' -36.1 NC_005902.1 + 144335 0.79 0.999999
Target:  5'- -aUUAACUCCUAAGGc---AUCAAUGa -3'
miRNA:   3'- gaAAUUGAGGAUUUCauaaUAGUUAC- -5'
28277 3' -36.1 NC_005902.1 + 144113 0.67 1
Target:  5'- ----uACUCCUAAAacAUUGUUAAUGa -3'
miRNA:   3'- gaaauUGAGGAUUUcaUAAUAGUUAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.