Results 1 - 20 of 75 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
28278 | 3' | -40.7 | NC_005902.1 | + | 91299 | 0.66 | 1 |
Target: 5'- cCCUUUAACUCCAcacaucaucaauaaUGCCuuaGgaGUUAAg- -3' miRNA: 3'- -GGAAAUUGAGGU--------------AUGG---CaaCAAUUac -5' |
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28278 | 3' | -40.7 | NC_005902.1 | + | 29276 | 0.7 | 1 |
Target: 5'- --aUUAACUCCAcAUUGUUGcUGAUGa -3' miRNA: 3'- ggaAAUUGAGGUaUGGCAACaAUUAC- -5' |
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28278 | 3' | -40.7 | NC_005902.1 | + | 96124 | 0.7 | 1 |
Target: 5'- cCCUUUAAUUCUAUAUCGUcaucAAUGa -3' miRNA: 3'- -GGAAAUUGAGGUAUGGCAacaaUUAC- -5' |
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28278 | 3' | -40.7 | NC_005902.1 | + | 166125 | 0.7 | 1 |
Target: 5'- cCCUUUAACUUCAcaucauugaugaUACUuugUGUUAAUGa -3' miRNA: 3'- -GGAAAUUGAGGU------------AUGGca-ACAAUUAC- -5' |
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28278 | 3' | -40.7 | NC_005902.1 | + | 10734 | 0.71 | 1 |
Target: 5'- cCCUUUAACUCUuaagaUGUUGUUAAc- -3' miRNA: 3'- -GGAAAUUGAGGuaug-GCAACAAUUac -5' |
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28278 | 3' | -40.7 | NC_005902.1 | + | 139816 | 0.69 | 1 |
Target: 5'- cCUUUUAACUCCA---UGUUGUcAAUGa -3' miRNA: 3'- -GGAAAUUGAGGUaugGCAACAaUUAC- -5' |
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28278 | 3' | -40.7 | NC_005902.1 | + | 134099 | 0.71 | 1 |
Target: 5'- uUCUUUAAUUUCAUAUUGUcauUGUUGAUa -3' miRNA: 3'- -GGAAAUUGAGGUAUGGCA---ACAAUUAc -5' |
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28278 | 3' | -40.7 | NC_005902.1 | + | 105999 | 0.66 | 1 |
Target: 5'- cUCUUUAACUCCuaa--GUUGUUcucAAUGa -3' miRNA: 3'- -GGAAAUUGAGGuauggCAACAA---UUAC- -5' |
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28278 | 3' | -40.7 | NC_005902.1 | + | 136638 | 0.7 | 1 |
Target: 5'- uCCUUUAACUUCAUGCauca-UUGAUGa -3' miRNA: 3'- -GGAAAUUGAGGUAUGgcaacAAUUAC- -5' |
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28278 | 3' | -40.7 | NC_005902.1 | + | 39401 | 0.69 | 1 |
Target: 5'- cCUUUUAACUCCAUAUUGaugaugcuUUGUUAu-- -3' miRNA: 3'- -GGAAAUUGAGGUAUGGC--------AACAAUuac -5' |
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28278 | 3' | -40.7 | NC_005902.1 | + | 17055 | 0.69 | 1 |
Target: 5'- cCUUUUAACUCUAUGuuGUcaUUGAUGa -3' miRNA: 3'- -GGAAAUUGAGGUAUggCAacAAUUAC- -5' |
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28278 | 3' | -40.7 | NC_005902.1 | + | 113964 | 0.69 | 1 |
Target: 5'- cCCUUUAACUuuGUAUUGUUaaUGAUGc -3' miRNA: 3'- -GGAAAUUGAggUAUGGCAAcaAUUAC- -5' |
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28278 | 3' | -40.7 | NC_005902.1 | + | 125952 | 0.66 | 1 |
Target: 5'- cUCUUUAACUUCuaagGCa-UUGUUGAUGa -3' miRNA: 3'- -GGAAAUUGAGGua--UGgcAACAAUUAC- -5' |
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28278 | 3' | -40.7 | NC_005902.1 | + | 136424 | 0.66 | 1 |
Target: 5'- --aUUAACUCUAUGCUGUuauaacacuuuauguUGUUAAc- -3' miRNA: 3'- ggaAAUUGAGGUAUGGCA---------------ACAAUUac -5' |
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28278 | 3' | -40.7 | NC_005902.1 | + | 114991 | 0.66 | 1 |
Target: 5'- cCCUUUAACUCUAcAUCGUcaccGAUGa -3' miRNA: 3'- -GGAAAUUGAGGUaUGGCAacaaUUAC- -5' |
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28278 | 3' | -40.7 | NC_005902.1 | + | 69406 | 0.67 | 1 |
Target: 5'- cCCUUUAACUUCAUAUCa---UUAAUGc -3' miRNA: 3'- -GGAAAUUGAGGUAUGGcaacAAUUAC- -5' |
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28278 | 3' | -40.7 | NC_005902.1 | + | 33490 | 0.67 | 1 |
Target: 5'- uCCUUUAACUCUAUAUUGUc------- -3' miRNA: 3'- -GGAAAUUGAGGUAUGGCAacaauuac -5' |
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28278 | 3' | -40.7 | NC_005902.1 | + | 100455 | 0.68 | 1 |
Target: 5'- uCCUUUAACUCCAcauuguaauaaUGCUuuGggGUUAAa- -3' miRNA: 3'- -GGAAAUUGAGGU-----------AUGG--CaaCAAUUac -5' |
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28278 | 3' | -40.7 | NC_005902.1 | + | 53092 | 0.68 | 1 |
Target: 5'- uCCUUUAACUCUuaagGUAUUGUUGaUGAc- -3' miRNA: 3'- -GGAAAUUGAGG----UAUGGCAACaAUUac -5' |
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28278 | 3' | -40.7 | NC_005902.1 | + | 134505 | 0.68 | 1 |
Target: 5'- cCCcUUAACUUCAcACCaUUGUUAAUa -3' miRNA: 3'- -GGaAAUUGAGGUaUGGcAACAAUUAc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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