miRNA display CGI


Results 1 - 20 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28278 3' -40.7 NC_005902.1 + 184445 0.79 0.997243
Target:  5'- cCCUUUAACUCUuaaGgUGUUGUUAAUGa -3'
miRNA:   3'- -GGAAAUUGAGGua-UgGCAACAAUUAC- -5'
28278 3' -40.7 NC_005902.1 + 181206 0.78 0.998717
Target:  5'- cCCUUUAACUCCuaaAgCGUUGUcAAUGa -3'
miRNA:   3'- -GGAAAUUGAGGua-UgGCAACAaUUAC- -5'
28278 3' -40.7 NC_005902.1 + 180958 0.8 0.994574
Target:  5'- cCCUUUAAC-CCAUGCUGUUGUc---- -3'
miRNA:   3'- -GGAAAUUGaGGUAUGGCAACAauuac -5'
28278 3' -40.7 NC_005902.1 + 175022 0.67 1
Target:  5'- cCCUUUAACUCaugcaucaucaauaAUGCaaaGaUUGUUGAUGa -3'
miRNA:   3'- -GGAAAUUGAGg-------------UAUGg--C-AACAAUUAC- -5'
28278 3' -40.7 NC_005902.1 + 174665 0.71 1
Target:  5'- cCCUUUAAUUCCAUAUUGUUa------ -3'
miRNA:   3'- -GGAAAUUGAGGUAUGGCAAcaauuac -5'
28278 3' -40.7 NC_005902.1 + 167483 0.69 1
Target:  5'- cUCUUUAAUUCUAUACUGUUaucAAUGa -3'
miRNA:   3'- -GGAAAUUGAGGUAUGGCAAcaaUUAC- -5'
28278 3' -40.7 NC_005902.1 + 167376 0.79 0.997703
Target:  5'- cCCUUUAACUCUAcACUGUUGccAGUGa -3'
miRNA:   3'- -GGAAAUUGAGGUaUGGCAACaaUUAC- -5'
28278 3' -40.7 NC_005902.1 + 166306 0.82 0.978607
Target:  5'- cCCUUcAACUCCAUACa-UUGUUAAUGa -3'
miRNA:   3'- -GGAAaUUGAGGUAUGgcAACAAUUAC- -5'
28278 3' -40.7 NC_005902.1 + 166125 0.7 1
Target:  5'- cCCUUUAACUUCAcaucauugaugaUACUuugUGUUAAUGa -3'
miRNA:   3'- -GGAAAUUGAGGU------------AUGGca-ACAAUUAC- -5'
28278 3' -40.7 NC_005902.1 + 162466 0.69 1
Target:  5'- uUUUUAAUUCCuaaGgUGUUGUUGAUGg -3'
miRNA:   3'- gGAAAUUGAGGua-UgGCAACAAUUAC- -5'
28278 3' -40.7 NC_005902.1 + 157918 0.67 1
Target:  5'- cCCUUUAACUCCAUgugucaucgaugauGCUuugUGUcauUGAUGa -3'
miRNA:   3'- -GGAAAUUGAGGUA--------------UGGca-ACA---AUUAC- -5'
28278 3' -40.7 NC_005902.1 + 149906 0.72 0.999999
Target:  5'- uCCUUUAACUUUA---UGUUGUUAAUGa -3'
miRNA:   3'- -GGAAAUUGAGGUaugGCAACAAUUAC- -5'
28278 3' -40.7 NC_005902.1 + 146653 0.73 0.999997
Target:  5'- aCCUUUAACUCUAcAUUGUcGUUAAUa -3'
miRNA:   3'- -GGAAAUUGAGGUaUGGCAaCAAUUAc -5'
28278 3' -40.7 NC_005902.1 + 144089 0.72 0.999999
Target:  5'- aCCaUUUAACUCUAUACCacUGUUGAc- -3'
miRNA:   3'- -GG-AAAUUGAGGUAUGGcaACAAUUac -5'
28278 3' -40.7 NC_005902.1 + 143547 0.68 1
Target:  5'- cCUUUUAACUCCAcAUCaUUGUcAAUGa -3'
miRNA:   3'- -GGAAAUUGAGGUaUGGcAACAaUUAC- -5'
28278 3' -40.7 NC_005902.1 + 140898 0.72 0.999998
Target:  5'- uCCUUaAACUCCAUGuuGUUGa----- -3'
miRNA:   3'- -GGAAaUUGAGGUAUggCAACaauuac -5'
28278 3' -40.7 NC_005902.1 + 139816 0.69 1
Target:  5'- cCUUUUAACUCCA---UGUUGUcAAUGa -3'
miRNA:   3'- -GGAAAUUGAGGUaugGCAACAaUUAC- -5'
28278 3' -40.7 NC_005902.1 + 136730 0.73 0.999995
Target:  5'- uUCUUUAACUCCAUGuuGUcauugacaaUGcUUAGUGu -3'
miRNA:   3'- -GGAAAUUGAGGUAUggCA---------AC-AAUUAC- -5'
28278 3' -40.7 NC_005902.1 + 136638 0.7 1
Target:  5'- uCCUUUAACUUCAUGCauca-UUGAUGa -3'
miRNA:   3'- -GGAAAUUGAGGUAUGgcaacAAUUAC- -5'
28278 3' -40.7 NC_005902.1 + 136424 0.66 1
Target:  5'- --aUUAACUCUAUGCUGUuauaacacuuuauguUGUUAAc- -3'
miRNA:   3'- ggaAAUUGAGGUAUGGCA---------------ACAAUUac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.