Results 1 - 20 of 220 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
28278 | 5' | -40.7 | NC_005902.1 | + | 80089 | 0.66 | 1 |
Target: 5'- -gCAUCAAC--UACCUcAGGAGUa-- -3' miRNA: 3'- caGUAGUUGuuAUGGAaUUCUCAauu -5' |
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28278 | 5' | -40.7 | NC_005902.1 | + | 107312 | 0.67 | 1 |
Target: 5'- aUUAUUGACuauAAUGCCUaAAGGGUUAAa -3' miRNA: 3'- cAGUAGUUG---UUAUGGAaUUCUCAAUU- -5' |
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28278 | 5' | -40.7 | NC_005902.1 | + | 55227 | 0.67 | 1 |
Target: 5'- uGUCAUCAACGAUACUUUGn------- -3' miRNA: 3'- -CAGUAGUUGUUAUGGAAUucucaauu -5' |
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28278 | 5' | -40.7 | NC_005902.1 | + | 144305 | 0.67 | 1 |
Target: 5'- uGUUGUCAACAGUGgUau-AGAGUUAAa -3' miRNA: 3'- -CAGUAGUUGUUAUgGaauUCUCAAUU- -5' |
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28278 | 5' | -40.7 | NC_005902.1 | + | 153941 | 0.67 | 1 |
Target: 5'- aUCAUCAACAAUAUgUUAgcaucAGAGa--- -3' miRNA: 3'- cAGUAGUUGUUAUGgAAU-----UCUCaauu -5' |
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28278 | 5' | -40.7 | NC_005902.1 | + | 25396 | 0.68 | 1 |
Target: 5'- aUCAUCAACAAUGauau--GAGUUAAa -3' miRNA: 3'- cAGUAGUUGUUAUggaauuCUCAAUU- -5' |
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28278 | 5' | -40.7 | NC_005902.1 | + | 63326 | 0.68 | 1 |
Target: 5'- -aUAUCAAUgauGAUGCCUUAAaAGUUAAa -3' miRNA: 3'- caGUAGUUG---UUAUGGAAUUcUCAAUU- -5' |
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28278 | 5' | -40.7 | NC_005902.1 | + | 71894 | 0.68 | 1 |
Target: 5'- aUCAUCAAUGAcgUgUUAGGAGUUAAg -3' miRNA: 3'- cAGUAGUUGUUauGgAAUUCUCAAUU- -5' |
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28278 | 5' | -40.7 | NC_005902.1 | + | 110385 | 0.68 | 1 |
Target: 5'- -aUAUUcuGACAAUGCCUUAGGAaUUAAa -3' miRNA: 3'- caGUAG--UUGUUAUGGAAUUCUcAAUU- -5' |
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28278 | 5' | -40.7 | NC_005902.1 | + | 149483 | 0.67 | 1 |
Target: 5'- aUCAUCGAUGAUGUCUUAAGuGUa-- -3' miRNA: 3'- cAGUAGUUGUUAUGGAAUUCuCAauu -5' |
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28278 | 5' | -40.7 | NC_005902.1 | + | 55104 | 0.67 | 1 |
Target: 5'- uGUCAUUGAUGAUGCUUUGuguuGAGUa-- -3' miRNA: 3'- -CAGUAGUUGUUAUGGAAUu---CUCAauu -5' |
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28278 | 5' | -40.7 | NC_005902.1 | + | 140047 | 0.67 | 1 |
Target: 5'- cGUCAUCAAUGAUGCaagGcgucauugacaacauGGAGUUAAa -3' miRNA: 3'- -CAGUAGUUGUUAUGgaaU---------------UCUCAAUU- -5' |
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28278 | 5' | -40.7 | NC_005902.1 | + | 39426 | 0.66 | 1 |
Target: 5'- aUUAUCAGCAAUAa-UUcAGAGUUAAc -3' miRNA: 3'- cAGUAGUUGUUAUggAAuUCUCAAUU- -5' |
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28278 | 5' | -40.7 | NC_005902.1 | + | 20569 | 0.66 | 1 |
Target: 5'- --gAUCAACAguGUACag-AAGAGUUAAa -3' miRNA: 3'- cagUAGUUGU--UAUGgaaUUCUCAAUU- -5' |
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28278 | 5' | -40.7 | NC_005902.1 | + | 150196 | 0.66 | 1 |
Target: 5'- uGUCAUCAACAAUGCauu-AGuGUc-- -3' miRNA: 3'- -CAGUAGUUGUUAUGgaauUCuCAauu -5' |
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28278 | 5' | -40.7 | NC_005902.1 | + | 78991 | 0.66 | 1 |
Target: 5'- uGUUAUCAACAAUGCaaagcaUUGuugauaacaaugcAGGGUUAAa -3' miRNA: 3'- -CAGUAGUUGUUAUGg-----AAU-------------UCUCAAUU- -5' |
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28278 | 5' | -40.7 | NC_005902.1 | + | 68450 | 0.66 | 1 |
Target: 5'- uGUCAUUAAUGAUGCagaguuaAAGGGUUAAu -3' miRNA: 3'- -CAGUAGUUGUUAUGgaa----UUCUCAAUU- -5' |
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28278 | 5' | -40.7 | NC_005902.1 | + | 136334 | 0.66 | 1 |
Target: 5'- uGUCAUUAAUGAUAgUgu-GGAGUUAAa -3' miRNA: 3'- -CAGUAGUUGUUAUgGaauUCUCAAUU- -5' |
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28278 | 5' | -40.7 | NC_005902.1 | + | 89124 | 0.67 | 1 |
Target: 5'- aUCAUCGAUAAUGCUUUGu--GUUGu -3' miRNA: 3'- cAGUAGUUGUUAUGGAAUucuCAAUu -5' |
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28278 | 5' | -40.7 | NC_005902.1 | + | 111250 | 0.67 | 1 |
Target: 5'- uGUCAUUAAUGAUAUUUUAGaAGUUAAc -3' miRNA: 3'- -CAGUAGUUGUUAUGGAAUUcUCAAUU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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