miRNA display CGI


Results 1 - 20 of 220 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28278 5' -40.7 NC_005902.1 + 55104 0.67 1
Target:  5'- uGUCAUUGAUGAUGCUUUGuguuGAGUa-- -3'
miRNA:   3'- -CAGUAGUUGUUAUGGAAUu---CUCAauu -5'
28278 5' -40.7 NC_005902.1 + 80089 0.66 1
Target:  5'- -gCAUCAAC--UACCUcAGGAGUa-- -3'
miRNA:   3'- caGUAGUUGuuAUGGAaUUCUCAauu -5'
28278 5' -40.7 NC_005902.1 + 110385 0.68 1
Target:  5'- -aUAUUcuGACAAUGCCUUAGGAaUUAAa -3'
miRNA:   3'- caGUAG--UUGUUAUGGAAUUCUcAAUU- -5'
28278 5' -40.7 NC_005902.1 + 71894 0.68 1
Target:  5'- aUCAUCAAUGAcgUgUUAGGAGUUAAg -3'
miRNA:   3'- cAGUAGUUGUUauGgAAUUCUCAAUU- -5'
28278 5' -40.7 NC_005902.1 + 63326 0.68 1
Target:  5'- -aUAUCAAUgauGAUGCCUUAAaAGUUAAa -3'
miRNA:   3'- caGUAGUUG---UUAUGGAAUUcUCAAUU- -5'
28278 5' -40.7 NC_005902.1 + 25396 0.68 1
Target:  5'- aUCAUCAACAAUGauau--GAGUUAAa -3'
miRNA:   3'- cAGUAGUUGUUAUggaauuCUCAAUU- -5'
28278 5' -40.7 NC_005902.1 + 153941 0.67 1
Target:  5'- aUCAUCAACAAUAUgUUAgcaucAGAGa--- -3'
miRNA:   3'- cAGUAGUUGUUAUGgAAU-----UCUCaauu -5'
28278 5' -40.7 NC_005902.1 + 144305 0.67 1
Target:  5'- uGUUGUCAACAGUGgUau-AGAGUUAAa -3'
miRNA:   3'- -CAGUAGUUGUUAUgGaauUCUCAAUU- -5'
28278 5' -40.7 NC_005902.1 + 55227 0.67 1
Target:  5'- uGUCAUCAACGAUACUUUGn------- -3'
miRNA:   3'- -CAGUAGUUGUUAUGGAAUucucaauu -5'
28278 5' -40.7 NC_005902.1 + 107312 0.67 1
Target:  5'- aUUAUUGACuauAAUGCCUaAAGGGUUAAa -3'
miRNA:   3'- cAGUAGUUG---UUAUGGAaUUCUCAAUU- -5'
28278 5' -40.7 NC_005902.1 + 149483 0.67 1
Target:  5'- aUCAUCGAUGAUGUCUUAAGuGUa-- -3'
miRNA:   3'- cAGUAGUUGUUAUGGAAUUCuCAauu -5'
28278 5' -40.7 NC_005902.1 + 99893 0.66 1
Target:  5'- cGUCAUCAACAAUGuggaaUUaAAGAGUa-- -3'
miRNA:   3'- -CAGUAGUUGUUAUg----GAaUUCUCAauu -5'
28278 5' -40.7 NC_005902.1 + 140047 0.67 1
Target:  5'- cGUCAUCAAUGAUGCaagGcgucauugacaacauGGAGUUAAa -3'
miRNA:   3'- -CAGUAGUUGUUAUGgaaU---------------UCUCAAUU- -5'
28278 5' -40.7 NC_005902.1 + 111250 0.67 1
Target:  5'- uGUCAUUAAUGAUAUUUUAGaAGUUAAc -3'
miRNA:   3'- -CAGUAGUUGUUAUGGAAUUcUCAAUU- -5'
28278 5' -40.7 NC_005902.1 + 89124 0.67 1
Target:  5'- aUCAUCGAUAAUGCUUUGu--GUUGu -3'
miRNA:   3'- cAGUAGUUGUUAUGGAAUucuCAAUu -5'
28278 5' -40.7 NC_005902.1 + 136334 0.66 1
Target:  5'- uGUCAUUAAUGAUAgUgu-GGAGUUAAa -3'
miRNA:   3'- -CAGUAGUUGUUAUgGaauUCUCAAUU- -5'
28278 5' -40.7 NC_005902.1 + 68450 0.66 1
Target:  5'- uGUCAUUAAUGAUGCagaguuaAAGGGUUAAu -3'
miRNA:   3'- -CAGUAGUUGUUAUGgaa----UUCUCAAUU- -5'
28278 5' -40.7 NC_005902.1 + 78991 0.66 1
Target:  5'- uGUUAUCAACAAUGCaaagcaUUGuugauaacaaugcAGGGUUAAa -3'
miRNA:   3'- -CAGUAGUUGUUAUGg-----AAU-------------UCUCAAUU- -5'
28278 5' -40.7 NC_005902.1 + 150196 0.66 1
Target:  5'- uGUCAUCAACAAUGCauu-AGuGUc-- -3'
miRNA:   3'- -CAGUAGUUGUUAUGgaauUCuCAauu -5'
28278 5' -40.7 NC_005902.1 + 20569 0.66 1
Target:  5'- --gAUCAACAguGUACag-AAGAGUUAAa -3'
miRNA:   3'- cagUAGUUGU--UAUGgaaUUCUCAAUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.