miRNA display CGI


Results 1 - 20 of 220 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28278 5' -40.7 NC_005902.1 + 104496 1.01 0.252725
Target:  5'- cGUCAUCAAUGAUGCCUUAAGAGUUAAc -3'
miRNA:   3'- -CAGUAGUUGUUAUGGAAUUCUCAAUU- -5'
28278 5' -40.7 NC_005902.1 + 90705 1.01 0.252725
Target:  5'- cGUCAUCGAUGAUGCCUUAAGAGUUAAa -3'
miRNA:   3'- -CAGUAGUUGUUAUGGAAUUCUCAAUU- -5'
28278 5' -40.7 NC_005902.1 + 37354 1 0.273889
Target:  5'- cGUCAUCGAUGAUGCCUUAGGAGUUAAa -3'
miRNA:   3'- -CAGUAGUUGUUAUGGAAUUCUCAAUU- -5'
28278 5' -40.7 NC_005902.1 + 17020 1 0.273889
Target:  5'- uGUCAUCAAUGAUGCCUUAGGAGUUAAa -3'
miRNA:   3'- -CAGUAGUUGUUAUGGAAUUCUCAAUU- -5'
28278 5' -40.7 NC_005902.1 + 91283 0.99 0.312279
Target:  5'- aUCAUCAAUAAUGCCUUAGGAGUUAAg -3'
miRNA:   3'- cAGUAGUUGUUAUGGAAUUCUCAAUU- -5'
28278 5' -40.7 NC_005902.1 + 33474 0.99 0.312279
Target:  5'- uGUCAUCGACGAUACUUUAGGAGUUAAa -3'
miRNA:   3'- -CAGUAGUUGUUAUGGAAUUCUCAAUU- -5'
28278 5' -40.7 NC_005902.1 + 33172 0.99 0.312279
Target:  5'- uGUCAUCGACGAUACUUUAGGAGUUAAa -3'
miRNA:   3'- -CAGUAGUUGUUAUGGAAUUCUCAAUU- -5'
28278 5' -40.7 NC_005902.1 + 16017 0.99 0.337207
Target:  5'- aUCAUUAACAAUGCCUUAGGAGUUAAa -3'
miRNA:   3'- cAGUAGUUGUUAUGGAAUUCUCAAUU- -5'
28278 5' -40.7 NC_005902.1 + 52877 0.97 0.381895
Target:  5'- cGUCAUCAACAAUACCUU-AGAGUUAAa -3'
miRNA:   3'- -CAGUAGUUGUUAUGGAAuUCUCAAUU- -5'
28278 5' -40.7 NC_005902.1 + 11281 0.97 0.391293
Target:  5'- aUCAUCAAUGAUGCCUUAGGAGUUAAa -3'
miRNA:   3'- cAGUAGUUGUUAUGGAAUUCUCAAUU- -5'
28278 5' -40.7 NC_005902.1 + 26421 0.96 0.430358
Target:  5'- aUCGUCAAUGAUGCCUUAGGAGUUAAg -3'
miRNA:   3'- cAGUAGUUGUUAUGGAAUUCUCAAUU- -5'
28278 5' -40.7 NC_005902.1 + 162164 0.96 0.440477
Target:  5'- uGUUAUUAACGAUGCCUUAGGAGUUAAa -3'
miRNA:   3'- -CAGUAGUUGUUAUGGAAUUCUCAAUU- -5'
28278 5' -40.7 NC_005902.1 + 134247 0.95 0.461111
Target:  5'- uGUUAUCAACAAUGCUUUAAGAGUUAAc -3'
miRNA:   3'- -CAGUAGUUGUUAUGGAAUUCUCAAUU- -5'
28278 5' -40.7 NC_005902.1 + 20200 0.94 0.503838
Target:  5'- uGUUAUCAAUGAUGCCUUAGGAGUUAAc -3'
miRNA:   3'- -CAGUAGUUGUUAUGGAAUUCUCAAUU- -5'
28278 5' -40.7 NC_005902.1 + 100357 0.94 0.51479
Target:  5'- uGUCAUCAAUGAUGCCUUAAGAGUa-- -3'
miRNA:   3'- -CAGUAGUUGUUAUGGAAUUCUCAauu -5'
28278 5' -40.7 NC_005902.1 + 167522 0.94 0.525838
Target:  5'- aUCAUUAAUAAUGCCUUAGGAGUUAAa -3'
miRNA:   3'- cAGUAGUUGUUAUGGAAUUCUCAAUU- -5'
28278 5' -40.7 NC_005902.1 + 11211 0.94 0.536974
Target:  5'- uGUCAUUGAUGAUGCCUUAAGAGUUAAg -3'
miRNA:   3'- -CAGUAGUUGUUAUGGAAUUCUCAAUU- -5'
28278 5' -40.7 NC_005902.1 + 177479 0.94 0.536974
Target:  5'- aGUUGUCAACAAUGCUUUGAGAGUUAGa -3'
miRNA:   3'- -CAGUAGUUGUUAUGGAAUUCUCAAUU- -5'
28278 5' -40.7 NC_005902.1 + 68037 0.93 0.55948
Target:  5'- uGUCAUUGACAAUGCUUUAGGAGUUAAa -3'
miRNA:   3'- -CAGUAGUUGUUAUGGAAUUCUCAAUU- -5'
28278 5' -40.7 NC_005902.1 + 26537 0.93 0.55948
Target:  5'- cGUCAUUGAUGAUGCCUUAGGAGUUAAu -3'
miRNA:   3'- -CAGUAGUUGUUAUGGAAUUCUCAAUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.