miRNA display CGI


Results 21 - 40 of 220 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28278 5' -40.7 NC_005902.1 + 20434 0.91 0.662793
Target:  5'- aUUAUCAAUGAUGCCUUAGGAGUUAAc -3'
miRNA:   3'- cAGUAGUUGUUAUGGAAUUCUCAAUU- -5'
28278 5' -40.7 NC_005902.1 + 8559 0.9 0.697074
Target:  5'- uGUCAUCGACAAUGuuUUAGGAGUUAAg -3'
miRNA:   3'- -CAGUAGUUGUUAUggAAUUCUCAAUU- -5'
28278 5' -40.7 NC_005902.1 + 156498 0.9 0.697074
Target:  5'- aUCAUUGAUGAUGCCUUAAGAGUUAAa -3'
miRNA:   3'- cAGUAGUUGUUAUGGAAUUCUCAAUU- -5'
28278 5' -40.7 NC_005902.1 + 114955 0.9 0.70838
Target:  5'- aUUAUCAAUGAUGCCUUGGGAGUUAGg -3'
miRNA:   3'- cAGUAGUUGUUAUGGAAUUCUCAAUU- -5'
28278 5' -40.7 NC_005902.1 + 82071 0.9 0.70838
Target:  5'- aUCAUCAAUAAcGCCUUAGGAGUUAAa -3'
miRNA:   3'- cAGUAGUUGUUaUGGAAUUCUCAAUU- -5'
28278 5' -40.7 NC_005902.1 + 172698 0.9 0.719604
Target:  5'- uGUUGUCAAUGAUGCCUUAGGGGUUAAc -3'
miRNA:   3'- -CAGUAGUUGUUAUGGAAUUCUCAAUU- -5'
28278 5' -40.7 NC_005902.1 + 67208 0.89 0.741753
Target:  5'- -gCAUCAauaACAAUGCCUUAGGAGUUAAa -3'
miRNA:   3'- caGUAGU---UGUUAUGGAAUUCUCAAUU- -5'
28278 5' -40.7 NC_005902.1 + 184659 0.89 0.741753
Target:  5'- aUCAUUAACAAcACCUUAAGAGUUAAa -3'
miRNA:   3'- cAGUAGUUGUUaUGGAAUUCUCAAUU- -5'
28278 5' -40.7 NC_005902.1 + 82416 0.89 0.752651
Target:  5'- -aCAUCAAUAAUAUCUUAGGAGUUAAa -3'
miRNA:   3'- caGUAGUUGUUAUGGAAUUCUCAAUU- -5'
28278 5' -40.7 NC_005902.1 + 139893 0.89 0.763415
Target:  5'- uGUCAUUGAUAAUAUCUUAGGAGUUAAa -3'
miRNA:   3'- -CAGUAGUUGUUAUGGAAUUCUCAAUU- -5'
28278 5' -40.7 NC_005902.1 + 158051 0.89 0.763415
Target:  5'- uGUCAUCAACAAcAUCUUAAGGGUUAAc -3'
miRNA:   3'- -CAGUAGUUGUUaUGGAAUUCUCAAUU- -5'
28278 5' -40.7 NC_005902.1 + 61552 0.88 0.784485
Target:  5'- aUCGUUGACAAUGCCUUAGGAGUg-- -3'
miRNA:   3'- cAGUAGUUGUUAUGGAAUUCUCAauu -5'
28278 5' -40.7 NC_005902.1 + 94458 0.88 0.804861
Target:  5'- uGUUAUaGACAAUGCCUUAGGAGUUAAg -3'
miRNA:   3'- -CAGUAgUUGUUAUGGAAUUCUCAAUU- -5'
28278 5' -40.7 NC_005902.1 + 55208 0.87 0.814757
Target:  5'- uGUUAUUAAUGAUGCCUUAGGGGUUAAa -3'
miRNA:   3'- -CAGUAGUUGUUAUGGAAUUCUCAAUU- -5'
28278 5' -40.7 NC_005902.1 + 96073 0.87 0.824442
Target:  5'- uGUUGUUGAUAAUGCCUUAGGAGUUAAa -3'
miRNA:   3'- -CAGUAGUUGUUAUGGAAUUCUCAAUU- -5'
28278 5' -40.7 NC_005902.1 + 106108 0.87 0.833905
Target:  5'- -gCAUUAAUGAUGCCUUAGGAGUUAAa -3'
miRNA:   3'- caGUAGUUGUUAUGGAAUUCUCAAUU- -5'
28278 5' -40.7 NC_005902.1 + 25284 0.87 0.833905
Target:  5'- aUCGUCAACAAcGCUUUAGGAGUUAAa -3'
miRNA:   3'- cAGUAGUUGUUaUGGAAUUCUCAAUU- -5'
28278 5' -40.7 NC_005902.1 + 137633 0.86 0.852122
Target:  5'- -aCAUCAAUGAUACUUUAGGAGUUAAa -3'
miRNA:   3'- caGUAGUUGUUAUGGAAUUCUCAAUU- -5'
28278 5' -40.7 NC_005902.1 + 27946 0.86 0.852122
Target:  5'- -cCAUCGGCGAUgauGCCUUAGGAGUUAAa -3'
miRNA:   3'- caGUAGUUGUUA---UGGAAUUCUCAAUU- -5'
28278 5' -40.7 NC_005902.1 + 96089 0.86 0.852122
Target:  5'- uGUUGUUGAUAAUGCCUUAGGAGUUAGa -3'
miRNA:   3'- -CAGUAGUUGUUAUGGAAUUCUCAAUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.