miRNA display CGI


Results 41 - 60 of 220 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28278 5' -40.7 NC_005902.1 + 137633 0.86 0.852122
Target:  5'- -aCAUCAAUGAUACUUUAGGAGUUAAa -3'
miRNA:   3'- caGUAGUUGUUAUGGAAUUCUCAAUU- -5'
28278 5' -40.7 NC_005902.1 + 23385 0.86 0.860856
Target:  5'- uGUCAUCAACAAUGCUUUAAaAGUUAAa -3'
miRNA:   3'- -CAGUAGUUGUUAUGGAAUUcUCAAUU- -5'
28278 5' -40.7 NC_005902.1 + 110012 0.86 0.860856
Target:  5'- aUUAUUGAUAAUACCUUAGGAGUUAAa -3'
miRNA:   3'- cAGUAGUUGUUAUGGAAUUCUCAAUU- -5'
28278 5' -40.7 NC_005902.1 + 134488 0.86 0.869327
Target:  5'- aUUGUUAAUAAUGCCUUAGGAGUUAAa -3'
miRNA:   3'- cAGUAGUUGUUAUGGAAUUCUCAAUU- -5'
28278 5' -40.7 NC_005902.1 + 81385 0.86 0.877528
Target:  5'- aUCGUUAACAAUAUUUUAAGAGUUAAa -3'
miRNA:   3'- cAGUAGUUGUUAUGGAAUUCUCAAUU- -5'
28278 5' -40.7 NC_005902.1 + 34789 0.85 0.885451
Target:  5'- aUUAUUAAUGAUACCUUAGGAGUUAAc -3'
miRNA:   3'- cAGUAGUUGUUAUGGAAUUCUCAAUU- -5'
28278 5' -40.7 NC_005902.1 + 48380 0.85 0.900437
Target:  5'- aUCAUUGAUAAUACUUUAGGAGUUAAa -3'
miRNA:   3'- cAGUAGUUGUUAUGGAAUUCUCAAUU- -5'
28278 5' -40.7 NC_005902.1 + 75967 0.85 0.900437
Target:  5'- uGUCAUUGAUggUGCUUUAGGAGUUAAg -3'
miRNA:   3'- -CAGUAGUUGuuAUGGAAUUCUCAAUU- -5'
28278 5' -40.7 NC_005902.1 + 84010 0.85 0.90749
Target:  5'- -aCAUCAuUAAUGCCUUAGGAGUUAAc -3'
miRNA:   3'- caGUAGUuGUUAUGGAAUUCUCAAUU- -5'
28278 5' -40.7 NC_005902.1 + 50628 0.84 0.920698
Target:  5'- uGUCAUCGAUGAUGCCUUAGGAaUUAAc -3'
miRNA:   3'- -CAGUAGUUGUUAUGGAAUUCUcAAUU- -5'
28278 5' -40.7 NC_005902.1 + 169883 0.84 0.920698
Target:  5'- uGUCAUUGAUGAcGCCUUAAGAGUUAAa -3'
miRNA:   3'- -CAGUAGUUGUUaUGGAAUUCUCAAUU- -5'
28278 5' -40.7 NC_005902.1 + 50198 0.84 0.926847
Target:  5'- aUUAUUGAUGAUGCCUUAGGAGUUAAa -3'
miRNA:   3'- cAGUAGUUGUUAUGGAAUUCUCAAUU- -5'
28278 5' -40.7 NC_005902.1 + 142118 0.84 0.932694
Target:  5'- uGUCAUCGAUGAUGCUUUAGGuGUUAAa -3'
miRNA:   3'- -CAGUAGUUGUUAUGGAAUUCuCAAUU- -5'
28278 5' -40.7 NC_005902.1 + 94402 0.84 0.938237
Target:  5'- aUUAUCAAUAAUACCUUAguaaAGAGUUAAa -3'
miRNA:   3'- cAGUAGUUGUUAUGGAAU----UCUCAAUU- -5'
28278 5' -40.7 NC_005902.1 + 150069 0.84 0.938237
Target:  5'- uGUCAUCAACGAUGuuUUAGGAGUUu- -3'
miRNA:   3'- -CAGUAGUUGUUAUggAAUUCUCAAuu -5'
28278 5' -40.7 NC_005902.1 + 167421 0.84 0.938237
Target:  5'- uGUUGUaAACAAUGCCUUAGGAGUUAAc -3'
miRNA:   3'- -CAGUAgUUGUUAUGGAAUUCUCAAUU- -5'
28278 5' -40.7 NC_005902.1 + 76285 0.84 0.938237
Target:  5'- aUCAUCAAC---ACCUUAAGAGUUAAa -3'
miRNA:   3'- cAGUAGUUGuuaUGGAAUUCUCAAUU- -5'
28278 5' -40.7 NC_005902.1 + 161921 0.83 0.943478
Target:  5'- uGUCAUCAAUAAcACCUUAGGGGUa-- -3'
miRNA:   3'- -CAGUAGUUGUUaUGGAAUUCUCAauu -5'
28278 5' -40.7 NC_005902.1 + 98974 0.83 0.943478
Target:  5'- aUCAUUAACAAUGCCUUAgaaguuaaGGGGUUAAg -3'
miRNA:   3'- cAGUAGUUGUUAUGGAAU--------UCUCAAUU- -5'
28278 5' -40.7 NC_005902.1 + 148215 0.83 0.943478
Target:  5'- aUUAUCAACAAUACCUUAGGAaUUAAu -3'
miRNA:   3'- cAGUAGUUGUUAUGGAAUUCUcAAUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.