miRNA display CGI


Results 41 - 60 of 220 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28278 5' -40.7 NC_005902.1 + 37354 1 0.273889
Target:  5'- cGUCAUCGAUGAUGCCUUAGGAGUUAAa -3'
miRNA:   3'- -CAGUAGUUGUUAUGGAAUUCUCAAUU- -5'
28278 5' -40.7 NC_005902.1 + 37464 0.7 1
Target:  5'- -aCAUUguuAUGAUACUUUAAGAGUUAAa -3'
miRNA:   3'- caGUAGu--UGUUAUGGAAUUCUCAAUU- -5'
28278 5' -40.7 NC_005902.1 + 39052 0.81 0.975083
Target:  5'- uGUUAUUAACAAUGCCUUAGaAGUUAAa -3'
miRNA:   3'- -CAGUAGUUGUUAUGGAAUUcUCAAUU- -5'
28278 5' -40.7 NC_005902.1 + 39231 0.83 0.953068
Target:  5'- aUCAUUAACAAUGCCUUAGaAGUUAAu -3'
miRNA:   3'- cAGUAGUUGUUAUGGAAUUcUCAAUU- -5'
28278 5' -40.7 NC_005902.1 + 39374 0.75 0.999692
Target:  5'- uGUUAUCAACAAcuUUUUAGGAGUUAAg -3'
miRNA:   3'- -CAGUAGUUGUUauGGAAUUCUCAAUU- -5'
28278 5' -40.7 NC_005902.1 + 39426 0.66 1
Target:  5'- aUUAUCAGCAAUAa-UUcAGAGUUAAc -3'
miRNA:   3'- cAGUAGUUGUUAUggAAuUCUCAAUU- -5'
28278 5' -40.7 NC_005902.1 + 40949 0.68 1
Target:  5'- aUCAUUGACAAUAgCau-GGAGUUAAa -3'
miRNA:   3'- cAGUAGUUGUUAUgGaauUCUCAAUU- -5'
28278 5' -40.7 NC_005902.1 + 42163 0.69 1
Target:  5'- uGUCAUUGACAAUAuuaauacauCCUUAaugcauggaAGAGUUAAa -3'
miRNA:   3'- -CAGUAGUUGUUAU---------GGAAU---------UCUCAAUU- -5'
28278 5' -40.7 NC_005902.1 + 42261 0.73 0.999984
Target:  5'- aUCAgCAAUAAUGCCUUAGaAGUUAAa -3'
miRNA:   3'- cAGUaGUUGUUAUGGAAUUcUCAAUU- -5'
28278 5' -40.7 NC_005902.1 + 42333 0.77 0.998767
Target:  5'- aUCGUUGAUAAUGCCUUAAGAuUUAAa -3'
miRNA:   3'- cAGUAGUUGUUAUGGAAUUCUcAAUU- -5'
28278 5' -40.7 NC_005902.1 + 45225 0.7 1
Target:  5'- aUCAUCAAUGcUGCCUUAaguuaaAGGGUUAu -3'
miRNA:   3'- cAGUAGUUGUuAUGGAAU------UCUCAAUu -5'
28278 5' -40.7 NC_005902.1 + 47159 0.7 1
Target:  5'- aUCAUUAGCGAUAUauuuAGAGUUAAc -3'
miRNA:   3'- cAGUAGUUGUUAUGgaauUCUCAAUU- -5'
28278 5' -40.7 NC_005902.1 + 48061 0.67 1
Target:  5'- aUCGUCAGCAAUACUUUGuGucauugacaauauaaAGUUAAa -3'
miRNA:   3'- cAGUAGUUGUUAUGGAAUuC---------------UCAAUU- -5'
28278 5' -40.7 NC_005902.1 + 48202 0.77 0.998767
Target:  5'- aUCAUCGAUGAcGCCUUAGGAGcUAAa -3'
miRNA:   3'- cAGUAGUUGUUaUGGAAUUCUCaAUU- -5'
28278 5' -40.7 NC_005902.1 + 48260 0.78 0.996113
Target:  5'- -gUAUUgcuGACGAUGCCUUAGGAGUUAu -3'
miRNA:   3'- caGUAG---UUGUUAUGGAAUUCUCAAUu -5'
28278 5' -40.7 NC_005902.1 + 48380 0.85 0.900437
Target:  5'- aUCAUUGAUAAUACUUUAGGAGUUAAa -3'
miRNA:   3'- cAGUAGUUGUUAUGGAAUUCUCAAUU- -5'
28278 5' -40.7 NC_005902.1 + 50198 0.84 0.926847
Target:  5'- aUUAUUGAUGAUGCCUUAGGAGUUAAa -3'
miRNA:   3'- cAGUAGUUGUUAUGGAAUUCUCAAUU- -5'
28278 5' -40.7 NC_005902.1 + 50523 0.75 0.999762
Target:  5'- uUCAUCAACAAUGUCUUAAaAGUUAAu -3'
miRNA:   3'- cAGUAGUUGUUAUGGAAUUcUCAAUU- -5'
28278 5' -40.7 NC_005902.1 + 50628 0.84 0.920698
Target:  5'- uGUCAUCGAUGAUGCCUUAGGAaUUAAc -3'
miRNA:   3'- -CAGUAGUUGUUAUGGAAUUCUcAAUU- -5'
28278 5' -40.7 NC_005902.1 + 52295 0.72 0.999996
Target:  5'- uGUCAUUGACAAUGCUUagcaucauuaaugAGGAGUUAAc -3'
miRNA:   3'- -CAGUAGUUGUUAUGGAa------------UUCUCAAUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.