miRNA display CGI


Results 21 - 40 of 220 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28278 5' -40.7 NC_005902.1 + 20458 0.82 0.968814
Target:  5'- uGUCGUUGAUGcUGCCUUAAGAGUUAAc -3'
miRNA:   3'- -CAGUAGUUGUuAUGGAAUUCUCAAUU- -5'
28278 5' -40.7 NC_005902.1 + 20569 0.66 1
Target:  5'- --gAUCAACAguGUACag-AAGAGUUAAa -3'
miRNA:   3'- cagUAGUUGU--UAUGgaaUUCUCAAUU- -5'
28278 5' -40.7 NC_005902.1 + 23385 0.86 0.860856
Target:  5'- uGUCAUCAACAAUGCUUUAAaAGUUAAa -3'
miRNA:   3'- -CAGUAGUUGUUAUGGAAUUcUCAAUU- -5'
28278 5' -40.7 NC_005902.1 + 25086 0.68 1
Target:  5'- cGUUGUUGACGAUACau--AGAGUUAAa -3'
miRNA:   3'- -CAGUAGUUGUUAUGgaauUCUCAAUU- -5'
28278 5' -40.7 NC_005902.1 + 25217 0.74 0.999942
Target:  5'- uGUCAUUGACAAcGCCUU--GAGUUAAa -3'
miRNA:   3'- -CAGUAGUUGUUaUGGAAuuCUCAAUU- -5'
28278 5' -40.7 NC_005902.1 + 25284 0.87 0.833905
Target:  5'- aUCGUCAACAAcGCUUUAGGAGUUAAa -3'
miRNA:   3'- cAGUAGUUGUUaUGGAAUUCUCAAUU- -5'
28278 5' -40.7 NC_005902.1 + 25396 0.68 1
Target:  5'- aUCAUCAACAAUGauau--GAGUUAAa -3'
miRNA:   3'- cAGUAGUUGUUAUggaauuCUCAAUU- -5'
28278 5' -40.7 NC_005902.1 + 26224 0.66 1
Target:  5'- aUCAUUGACGAUGgUgu-AGAGUUAAu -3'
miRNA:   3'- cAGUAGUUGUUAUgGaauUCUCAAUU- -5'
28278 5' -40.7 NC_005902.1 + 26421 0.96 0.430358
Target:  5'- aUCGUCAAUGAUGCCUUAGGAGUUAAg -3'
miRNA:   3'- cAGUAGUUGUUAUGGAAUUCUCAAUU- -5'
28278 5' -40.7 NC_005902.1 + 26537 0.93 0.55948
Target:  5'- cGUCAUUGAUGAUGCCUUAGGAGUUAAu -3'
miRNA:   3'- -CAGUAGUUGUUAUGGAAUUCUCAAUU- -5'
28278 5' -40.7 NC_005902.1 + 26645 0.8 0.988396
Target:  5'- uGUCAUUGAUAAUGCCUUAgaaauuaaAGGGUUAAa -3'
miRNA:   3'- -CAGUAGUUGUUAUGGAAU--------UCUCAAUU- -5'
28278 5' -40.7 NC_005902.1 + 27633 0.86 0.852122
Target:  5'- -cCAUCGGCGAUgauGCCUUAGGAGUUAAa -3'
miRNA:   3'- caGUAGUUGUUA---UGGAAUUCUCAAUU- -5'
28278 5' -40.7 NC_005902.1 + 27946 0.86 0.852122
Target:  5'- -cCAUCGGCGAUgauGCCUUAGGAGUUAAa -3'
miRNA:   3'- caGUAGUUGUUA---UGGAAUUCUCAAUU- -5'
28278 5' -40.7 NC_005902.1 + 28725 0.67 1
Target:  5'- aGUCAUaGAUGAUGCCUUAgauuaaGGAGUa-- -3'
miRNA:   3'- -CAGUAgUUGUUAUGGAAU------UCUCAauu -5'
28278 5' -40.7 NC_005902.1 + 33058 0.79 0.992523
Target:  5'- aUCAUCGAUGAUACCUU--GAGUUAAu -3'
miRNA:   3'- cAGUAGUUGUUAUGGAAuuCUCAAUU- -5'
28278 5' -40.7 NC_005902.1 + 33172 0.99 0.312279
Target:  5'- uGUCAUCGACGAUACUUUAGGAGUUAAa -3'
miRNA:   3'- -CAGUAGUUGUUAUGGAAUUCUCAAUU- -5'
28278 5' -40.7 NC_005902.1 + 33474 0.99 0.312279
Target:  5'- uGUCAUCGACGAUACUUUAGGAGUUAAa -3'
miRNA:   3'- -CAGUAGUUGUUAUGGAAUUCUCAAUU- -5'
28278 5' -40.7 NC_005902.1 + 34789 0.85 0.885451
Target:  5'- aUUAUUAAUGAUACCUUAGGAGUUAAc -3'
miRNA:   3'- cAGUAGUUGUUAUGGAAUUCUCAAUU- -5'
28278 5' -40.7 NC_005902.1 + 34939 0.71 0.999999
Target:  5'- aUCAUCAACAAUAU----GGGGUUAAa -3'
miRNA:   3'- cAGUAGUUGUUAUGgaauUCUCAAUU- -5'
28278 5' -40.7 NC_005902.1 + 36343 0.74 0.999895
Target:  5'- -gUAUUGACGAUAaccCCUUAGGAGUUAAg -3'
miRNA:   3'- caGUAGUUGUUAU---GGAAUUCUCAAUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.