miRNA display CGI


Results 21 - 40 of 220 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28278 5' -40.7 NC_005902.1 + 34789 0.85 0.885451
Target:  5'- aUUAUUAAUGAUACCUUAGGAGUUAAc -3'
miRNA:   3'- cAGUAGUUGUUAUGGAAUUCUCAAUU- -5'
28278 5' -40.7 NC_005902.1 + 27633 0.86 0.852122
Target:  5'- -cCAUCGGCGAUgauGCCUUAGGAGUUAAa -3'
miRNA:   3'- caGUAGUUGUUA---UGGAAUUCUCAAUU- -5'
28278 5' -40.7 NC_005902.1 + 67208 0.89 0.741753
Target:  5'- -gCAUCAauaACAAUGCCUUAGGAGUUAAa -3'
miRNA:   3'- caGUAGU---UGUUAUGGAAUUCUCAAUU- -5'
28278 5' -40.7 NC_005902.1 + 134247 0.95 0.461111
Target:  5'- uGUUAUCAACAAUGCUUUAAGAGUUAAc -3'
miRNA:   3'- -CAGUAGUUGUUAUGGAAUUCUCAAUU- -5'
28278 5' -40.7 NC_005902.1 + 180991 0.8 0.984786
Target:  5'- aUCAUUGACAAcGCUUUAGGAGUUAAa -3'
miRNA:   3'- cAGUAGUUGUUaUGGAAUUCUCAAUU- -5'
28278 5' -40.7 NC_005902.1 + 148215 0.83 0.943478
Target:  5'- aUUAUCAACAAUACCUUAGGAaUUAAu -3'
miRNA:   3'- cAGUAGUUGUUAUGGAAUUCUcAAUU- -5'
28278 5' -40.7 NC_005902.1 + 106108 0.87 0.833905
Target:  5'- -gCAUUAAUGAUGCCUUAGGAGUUAAa -3'
miRNA:   3'- caGUAGUUGUUAUGGAAUUCUCAAUU- -5'
28278 5' -40.7 NC_005902.1 + 52877 0.97 0.381895
Target:  5'- cGUCAUCAACAAUACCUU-AGAGUUAAa -3'
miRNA:   3'- -CAGUAGUUGUUAUGGAAuUCUCAAUU- -5'
28278 5' -40.7 NC_005902.1 + 161921 0.83 0.943478
Target:  5'- uGUCAUCAAUAAcACCUUAGGGGUa-- -3'
miRNA:   3'- -CAGUAGUUGUUaUGGAAUUCUCAauu -5'
28278 5' -40.7 NC_005902.1 + 33172 0.99 0.312279
Target:  5'- uGUCAUCGACGAUACUUUAGGAGUUAAa -3'
miRNA:   3'- -CAGUAGUUGUUAUGGAAUUCUCAAUU- -5'
28278 5' -40.7 NC_005902.1 + 137633 0.86 0.852122
Target:  5'- -aCAUCAAUGAUACUUUAGGAGUUAAa -3'
miRNA:   3'- caGUAGUUGUUAUGGAAUUCUCAAUU- -5'
28278 5' -40.7 NC_005902.1 + 142118 0.84 0.932694
Target:  5'- uGUCAUCGAUGAUGCUUUAGGuGUUAAa -3'
miRNA:   3'- -CAGUAGUUGUUAUGGAAUUCuCAAUU- -5'
28278 5' -40.7 NC_005902.1 + 61552 0.88 0.784485
Target:  5'- aUCGUUGACAAUGCCUUAGGAGUg-- -3'
miRNA:   3'- cAGUAGUUGUUAUGGAAUUCUCAauu -5'
28278 5' -40.7 NC_005902.1 + 82416 0.89 0.752651
Target:  5'- -aCAUCAAUAAUAUCUUAGGAGUUAAa -3'
miRNA:   3'- caGUAGUUGUUAUGGAAUUCUCAAUU- -5'
28278 5' -40.7 NC_005902.1 + 11211 0.94 0.536974
Target:  5'- uGUCAUUGAUGAUGCCUUAAGAGUUAAg -3'
miRNA:   3'- -CAGUAGUUGUUAUGGAAUUCUCAAUU- -5'
28278 5' -40.7 NC_005902.1 + 20200 0.94 0.503838
Target:  5'- uGUUAUCAAUGAUGCCUUAGGAGUUAAc -3'
miRNA:   3'- -CAGUAGUUGUUAUGGAAUUCUCAAUU- -5'
28278 5' -40.7 NC_005902.1 + 33058 0.79 0.992523
Target:  5'- aUCAUCGAUGAUACCUU--GAGUUAAu -3'
miRNA:   3'- cAGUAGUUGUUAUGGAAuuCUCAAUU- -5'
28278 5' -40.7 NC_005902.1 + 143742 0.8 0.988396
Target:  5'- uGUCAUUGAUAAUGCCUUGaguuaaGGGGUUAAg -3'
miRNA:   3'- -CAGUAGUUGUUAUGGAAU------UCUCAAUU- -5'
28278 5' -40.7 NC_005902.1 + 39052 0.81 0.975083
Target:  5'- uGUUAUUAACAAUGCCUUAGaAGUUAAa -3'
miRNA:   3'- -CAGUAGUUGUUAUGGAAUUcUCAAUU- -5'
28278 5' -40.7 NC_005902.1 + 74864 0.83 0.953068
Target:  5'- cGUCAUCAACAAcGCaUUAGGAGUUAAa -3'
miRNA:   3'- -CAGUAGUUGUUaUGgAAUUCUCAAUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.