miRNA display CGI


Results 21 - 40 of 220 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28278 5' -40.7 NC_005902.1 + 81391 0.67 1
Target:  5'- aUCAUCGAUAAcACUUUAugaaucgGGGGUUAAg -3'
miRNA:   3'- cAGUAGUUGUUaUGGAAU-------UCUCAAUU- -5'
28278 5' -40.7 NC_005902.1 + 111250 0.67 1
Target:  5'- uGUCAUUAAUGAUAUUUUAGaAGUUAAc -3'
miRNA:   3'- -CAGUAGUUGUUAUGGAAUUcUCAAUU- -5'
28278 5' -40.7 NC_005902.1 + 140047 0.67 1
Target:  5'- cGUCAUCAAUGAUGCaagGcgucauugacaacauGGAGUUAAa -3'
miRNA:   3'- -CAGUAGUUGUUAUGgaaU---------------UCUCAAUU- -5'
28278 5' -40.7 NC_005902.1 + 55104 0.67 1
Target:  5'- uGUCAUUGAUGAUGCUUUGuguuGAGUa-- -3'
miRNA:   3'- -CAGUAGUUGUUAUGGAAUu---CUCAauu -5'
28278 5' -40.7 NC_005902.1 + 149483 0.67 1
Target:  5'- aUCAUCGAUGAUGUCUUAAGuGUa-- -3'
miRNA:   3'- cAGUAGUUGUUAUGGAAUUCuCAauu -5'
28278 5' -40.7 NC_005902.1 + 107312 0.67 1
Target:  5'- aUUAUUGACuauAAUGCCUaAAGGGUUAAa -3'
miRNA:   3'- cAGUAGUUG---UUAUGGAaUUCUCAAUU- -5'
28278 5' -40.7 NC_005902.1 + 55227 0.67 1
Target:  5'- uGUCAUCAACGAUACUUUGn------- -3'
miRNA:   3'- -CAGUAGUUGUUAUGGAAUucucaauu -5'
28278 5' -40.7 NC_005902.1 + 144305 0.67 1
Target:  5'- uGUUGUCAACAGUGgUau-AGAGUUAAa -3'
miRNA:   3'- -CAGUAGUUGUUAUgGaauUCUCAAUU- -5'
28278 5' -40.7 NC_005902.1 + 89124 0.67 1
Target:  5'- aUCAUCGAUAAUGCUUUGu--GUUGu -3'
miRNA:   3'- cAGUAGUUGUUAUGGAAUucuCAAUu -5'
28278 5' -40.7 NC_005902.1 + 122868 0.67 1
Target:  5'- aUUGUUGAUGAUGCCUUAGGAaUUAAa -3'
miRNA:   3'- cAGUAGUUGUUAUGGAAUUCUcAAUU- -5'
28278 5' -40.7 NC_005902.1 + 146886 0.68 1
Target:  5'- uGUCAUCAAUGAUGCUucaugUUAuuaacgacaauguAGAGUUAAa -3'
miRNA:   3'- -CAGUAGUUGUUAUGG-----AAU-------------UCUCAAUU- -5'
28278 5' -40.7 NC_005902.1 + 55147 0.68 1
Target:  5'- uGUUAUCAACAAUGCagaaUUaAAGGGUg-- -3'
miRNA:   3'- -CAGUAGUUGUUAUGg---AA-UUCUCAauu -5'
28278 5' -40.7 NC_005902.1 + 113950 0.68 1
Target:  5'- aUUGUUAAUGAUGCUgcuUUAGGAGUUAAa -3'
miRNA:   3'- cAGUAGUUGUUAUGG---AAUUCUCAAUU- -5'
28278 5' -40.7 NC_005902.1 + 143761 0.68 1
Target:  5'- uGUCAUUGACAAUGaugu-GGAGUUAAa -3'
miRNA:   3'- -CAGUAGUUGUUAUggaauUCUCAAUU- -5'
28278 5' -40.7 NC_005902.1 + 25086 0.68 1
Target:  5'- cGUUGUUGACGAUACau--AGAGUUAAa -3'
miRNA:   3'- -CAGUAGUUGUUAUGgaauUCUCAAUU- -5'
28278 5' -40.7 NC_005902.1 + 169288 0.68 1
Target:  5'- uGUC-UCAACGAcGCCUUAAGAa---- -3'
miRNA:   3'- -CAGuAGUUGUUaUGGAAUUCUcaauu -5'
28278 5' -40.7 NC_005902.1 + 55345 0.68 1
Target:  5'- aUUGUUGAUAAcAUCUUAAGAGUUAAa -3'
miRNA:   3'- cAGUAGUUGUUaUGGAAUUCUCAAUU- -5'
28278 5' -40.7 NC_005902.1 + 40949 0.68 1
Target:  5'- aUCAUUGACAAUAgCau-GGAGUUAAa -3'
miRNA:   3'- cAGUAGUUGUUAUgGaauUCUCAAUU- -5'
28278 5' -40.7 NC_005902.1 + 81092 0.68 1
Target:  5'- aUUAUCAGCAAUGCUUUAu--GUUAu -3'
miRNA:   3'- cAGUAGUUGUUAUGGAAUucuCAAUu -5'
28278 5' -40.7 NC_005902.1 + 58369 0.68 1
Target:  5'- --uGUCAAUAAcgUCUUAAGAGUUAAa -3'
miRNA:   3'- cagUAGUUGUUauGGAAUUCUCAAUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.