miRNA display CGI


Results 41 - 60 of 220 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28278 5' -40.7 NC_005902.1 + 55345 0.68 1
Target:  5'- aUUGUUGAUAAcAUCUUAAGAGUUAAa -3'
miRNA:   3'- cAGUAGUUGUUaUGGAAUUCUCAAUU- -5'
28278 5' -40.7 NC_005902.1 + 40949 0.68 1
Target:  5'- aUCAUUGACAAUAgCau-GGAGUUAAa -3'
miRNA:   3'- cAGUAGUUGUUAUgGaauUCUCAAUU- -5'
28278 5' -40.7 NC_005902.1 + 81092 0.68 1
Target:  5'- aUUAUCAGCAAUGCUUUAu--GUUAu -3'
miRNA:   3'- cAGUAGUUGUUAUGGAAUucuCAAUu -5'
28278 5' -40.7 NC_005902.1 + 58369 0.68 1
Target:  5'- --uGUCAAUAAcgUCUUAAGAGUUAAa -3'
miRNA:   3'- cagUAGUUGUUauGGAAUUCUCAAUU- -5'
28278 5' -40.7 NC_005902.1 + 71894 0.68 1
Target:  5'- aUCAUCAAUGAcgUgUUAGGAGUUAAg -3'
miRNA:   3'- cAGUAGUUGUUauGgAAUUCUCAAUU- -5'
28278 5' -40.7 NC_005902.1 + 146886 0.68 1
Target:  5'- uGUCAUCAAUGAUGCUucaugUUAuuaacgacaauguAGAGUUAAa -3'
miRNA:   3'- -CAGUAGUUGUUAUGG-----AAU-------------UCUCAAUU- -5'
28278 5' -40.7 NC_005902.1 + 63326 0.68 1
Target:  5'- -aUAUCAAUgauGAUGCCUUAAaAGUUAAa -3'
miRNA:   3'- caGUAGUUG---UUAUGGAAUUcUCAAUU- -5'
28278 5' -40.7 NC_005902.1 + 67898 0.68 1
Target:  5'- aUCAUCGAUAAUAU----AGAGUUAAa -3'
miRNA:   3'- cAGUAGUUGUUAUGgaauUCUCAAUU- -5'
28278 5' -40.7 NC_005902.1 + 25396 0.68 1
Target:  5'- aUCAUCAACAAUGauau--GAGUUAAa -3'
miRNA:   3'- cAGUAGUUGUUAUggaauuCUCAAUU- -5'
28278 5' -40.7 NC_005902.1 + 113950 0.68 1
Target:  5'- aUUGUUAAUGAUGCUgcuUUAGGAGUUAAa -3'
miRNA:   3'- cAGUAGUUGUUAUGG---AAUUCUCAAUU- -5'
28278 5' -40.7 NC_005902.1 + 184626 0.69 1
Target:  5'- cUCAUCGuauAUAgCUUAGGGGUUAAa -3'
miRNA:   3'- cAGUAGUuguUAUgGAAUUCUCAAUU- -5'
28278 5' -40.7 NC_005902.1 + 42163 0.69 1
Target:  5'- uGUCAUUGACAAUAuuaauacauCCUUAaugcauggaAGAGUUAAa -3'
miRNA:   3'- -CAGUAGUUGUUAU---------GGAAU---------UCUCAAUU- -5'
28278 5' -40.7 NC_005902.1 + 8380 0.69 1
Target:  5'- aUCAUUAACAAUGgUgu-AGAGUUAAa -3'
miRNA:   3'- cAGUAGUUGUUAUgGaauUCUCAAUU- -5'
28278 5' -40.7 NC_005902.1 + 154870 0.69 1
Target:  5'- aUUGUUGAUAAUGCCUUAAaAGUUAAa -3'
miRNA:   3'- cAGUAGUUGUUAUGGAAUUcUCAAUU- -5'
28278 5' -40.7 NC_005902.1 + 93702 0.69 1
Target:  5'- uGUCAUUGACAAUAaugu-AGAGUUAAa -3'
miRNA:   3'- -CAGUAGUUGUUAUggaauUCUCAAUU- -5'
28278 5' -40.7 NC_005902.1 + 134333 0.69 1
Target:  5'- uGUCAUCAACGAUGCUUUGu------- -3'
miRNA:   3'- -CAGUAGUUGUUAUGGAAUucucaauu -5'
28278 5' -40.7 NC_005902.1 + 116905 0.69 1
Target:  5'- aUCAUCAAUAAUGCUUUAGGuauUUAc -3'
miRNA:   3'- cAGUAGUUGUUAUGGAAUUCuc-AAUu -5'
28278 5' -40.7 NC_005902.1 + 10580 0.7 1
Target:  5'- cGUUAcCAACGAUACUUUAAaAGUUAAa -3'
miRNA:   3'- -CAGUaGUUGUUAUGGAAUUcUCAAUU- -5'
28278 5' -40.7 NC_005902.1 + 37464 0.7 1
Target:  5'- -aCAUUguuAUGAUACUUUAAGAGUUAAa -3'
miRNA:   3'- caGUAGu--UGUUAUGGAAUUCUCAAUU- -5'
28278 5' -40.7 NC_005902.1 + 73020 0.7 1
Target:  5'- aUCAUUAACAAUGCCUUAAc------ -3'
miRNA:   3'- cAGUAGUUGUUAUGGAAUUcucaauu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.