miRNA display CGI


Results 41 - 60 of 220 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28278 5' -40.7 NC_005902.1 + 144124 0.81 0.982687
Target:  5'- -gUAUCAuuGAUGCCUUAGGAGUUAAc -3'
miRNA:   3'- caGUAGUugUUAUGGAAUUCUCAAUU- -5'
28278 5' -40.7 NC_005902.1 + 106108 0.87 0.833905
Target:  5'- -gCAUUAAUGAUGCCUUAGGAGUUAAa -3'
miRNA:   3'- caGUAGUUGUUAUGGAAUUCUCAAUU- -5'
28278 5' -40.7 NC_005902.1 + 52877 0.97 0.381895
Target:  5'- cGUCAUCAACAAUACCUU-AGAGUUAAa -3'
miRNA:   3'- -CAGUAGUUGUUAUGGAAuUCUCAAUU- -5'
28278 5' -40.7 NC_005902.1 + 67081 0.81 0.982466
Target:  5'- aUCAUCAACAAcACCUUAggauuaaAGAGUUAAu -3'
miRNA:   3'- cAGUAGUUGUUaUGGAAU-------UCUCAAUU- -5'
28278 5' -40.7 NC_005902.1 + 33172 0.99 0.312279
Target:  5'- uGUCAUCGACGAUACUUUAGGAGUUAAa -3'
miRNA:   3'- -CAGUAGUUGUUAUGGAAUUCUCAAUU- -5'
28278 5' -40.7 NC_005902.1 + 36343 0.74 0.999895
Target:  5'- -gUAUUGACGAUAaccCCUUAGGAGUUAAg -3'
miRNA:   3'- caGUAGUUGUUAU---GGAAUUCUCAAUU- -5'
28278 5' -40.7 NC_005902.1 + 20200 0.94 0.503838
Target:  5'- uGUUAUCAAUGAUGCCUUAGGAGUUAAc -3'
miRNA:   3'- -CAGUAGUUGUUAUGGAAUUCUCAAUU- -5'
28278 5' -40.7 NC_005902.1 + 78774 0.75 0.999786
Target:  5'- uGUUAUCAACAAugcuUugcauuguugauaacACCUUAAGAGUUAAa -3'
miRNA:   3'- -CAGUAGUUGUU----A---------------UGGAAUUCUCAAUU- -5'
28278 5' -40.7 NC_005902.1 + 81188 0.75 0.999605
Target:  5'- aUUGUUAACGAUauaacaacACCUUAAGAGUUAAu -3'
miRNA:   3'- cAGUAGUUGUUA--------UGGAAUUCUCAAUU- -5'
28278 5' -40.7 NC_005902.1 + 137574 0.77 0.998484
Target:  5'- uGUUAUCAAUAAUGCCaUAGGAGcUAAa -3'
miRNA:   3'- -CAGUAGUUGUUAUGGaAUUCUCaAUU- -5'
28278 5' -40.7 NC_005902.1 + 10494 0.78 0.995386
Target:  5'- aUUAUCGAUAAUGCCUUAGGAaUUAAa -3'
miRNA:   3'- cAGUAGUUGUUAUGGAAUUCUcAAUU- -5'
28278 5' -40.7 NC_005902.1 + 33058 0.79 0.992523
Target:  5'- aUCAUCGAUGAUACCUU--GAGUUAAu -3'
miRNA:   3'- cAGUAGUUGUUAUGGAAuuCUCAAUU- -5'
28278 5' -40.7 NC_005902.1 + 143742 0.8 0.988396
Target:  5'- uGUCAUUGAUAAUGCCUUGaguuaaGGGGUUAAg -3'
miRNA:   3'- -CAGUAGUUGUUAUGGAAU------UCUCAAUU- -5'
28278 5' -40.7 NC_005902.1 + 20458 0.82 0.968814
Target:  5'- uGUCGUUGAUGcUGCCUUAAGAGUUAAc -3'
miRNA:   3'- -CAGUAGUUGUuAUGGAAUUCUCAAUU- -5'
28278 5' -40.7 NC_005902.1 + 161921 0.83 0.943478
Target:  5'- uGUCAUCAAUAAcACCUUAGGGGUa-- -3'
miRNA:   3'- -CAGUAGUUGUUaUGGAAUUCUCAauu -5'
28278 5' -40.7 NC_005902.1 + 34789 0.85 0.885451
Target:  5'- aUUAUUAAUGAUACCUUAGGAGUUAAc -3'
miRNA:   3'- cAGUAGUUGUUAUGGAAUUCUCAAUU- -5'
28278 5' -40.7 NC_005902.1 + 27633 0.86 0.852122
Target:  5'- -cCAUCGGCGAUgauGCCUUAGGAGUUAAa -3'
miRNA:   3'- caGUAGUUGUUA---UGGAAUUCUCAAUU- -5'
28278 5' -40.7 NC_005902.1 + 61552 0.88 0.784485
Target:  5'- aUCGUUGACAAUGCCUUAGGAGUg-- -3'
miRNA:   3'- cAGUAGUUGUUAUGGAAUUCUCAauu -5'
28278 5' -40.7 NC_005902.1 + 82416 0.89 0.752651
Target:  5'- -aCAUCAAUAAUAUCUUAGGAGUUAAa -3'
miRNA:   3'- caGUAGUUGUUAUGGAAUUCUCAAUU- -5'
28278 5' -40.7 NC_005902.1 + 11211 0.94 0.536974
Target:  5'- uGUCAUUGAUGAUGCCUUAAGAGUUAAg -3'
miRNA:   3'- -CAGUAGUUGUUAUGGAAUUCUCAAUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.