miRNA display CGI


Results 21 - 40 of 220 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28278 5' -40.7 NC_005902.1 + 163599 0.73 0.999978
Target:  5'- uGUUAUUAAUGAcACUUUAGGAGUUAAg -3'
miRNA:   3'- -CAGUAGUUGUUaUGGAAUUCUCAAUU- -5'
28278 5' -40.7 NC_005902.1 + 162678 0.75 0.999817
Target:  5'- -cCAUCAACAAcACCUUAGGAaUUAAa -3'
miRNA:   3'- caGUAGUUGUUaUGGAAUUCUcAAUU- -5'
28278 5' -40.7 NC_005902.1 + 162502 0.67 1
Target:  5'- aUCAUCAACAAUGu----AGAGUUAAc -3'
miRNA:   3'- cAGUAGUUGUUAUggaauUCUCAAUU- -5'
28278 5' -40.7 NC_005902.1 + 162164 0.96 0.440477
Target:  5'- uGUUAUUAACGAUGCCUUAGGAGUUAAa -3'
miRNA:   3'- -CAGUAGUUGUUAUGGAAUUCUCAAUU- -5'
28278 5' -40.7 NC_005902.1 + 161989 0.78 0.997286
Target:  5'- aUCAUCAAUGAcACCUUAGGuGUUAAa -3'
miRNA:   3'- cAGUAGUUGUUaUGGAAUUCuCAAUU- -5'
28278 5' -40.7 NC_005902.1 + 161921 0.83 0.943478
Target:  5'- uGUCAUCAAUAAcACCUUAGGGGUa-- -3'
miRNA:   3'- -CAGUAGUUGUUaUGGAAUUCUCAauu -5'
28278 5' -40.7 NC_005902.1 + 161846 0.74 0.999922
Target:  5'- aUCAUCAAUAuacaGCCUUAuGAGUUAAc -3'
miRNA:   3'- cAGUAGUUGUua--UGGAAUuCUCAAUU- -5'
28278 5' -40.7 NC_005902.1 + 158051 0.89 0.763415
Target:  5'- uGUCAUCAACAAcAUCUUAAGGGUUAAc -3'
miRNA:   3'- -CAGUAGUUGUUaUGGAAUUCUCAAUU- -5'
28278 5' -40.7 NC_005902.1 + 157952 0.71 0.999998
Target:  5'- uGUCAUUGAUGAUACUUUAGGAaUUAAa -3'
miRNA:   3'- -CAGUAGUUGUUAUGGAAUUCUcAAUU- -5'
28278 5' -40.7 NC_005902.1 + 156498 0.9 0.697074
Target:  5'- aUCAUUGAUGAUGCCUUAAGAGUUAAa -3'
miRNA:   3'- cAGUAGUUGUUAUGGAAUUCUCAAUU- -5'
28278 5' -40.7 NC_005902.1 + 154870 0.69 1
Target:  5'- aUUGUUGAUAAUGCCUUAAaAGUUAAa -3'
miRNA:   3'- cAGUAGUUGUUAUGGAAUUcUCAAUU- -5'
28278 5' -40.7 NC_005902.1 + 154674 0.68 1
Target:  5'- aUUAUCAACAAUACUucugUUAuugaugauguuuGGAGUUAAa -3'
miRNA:   3'- cAGUAGUUGUUAUGG----AAU------------UCUCAAUU- -5'
28278 5' -40.7 NC_005902.1 + 153941 0.67 1
Target:  5'- aUCAUCAACAAUAUgUUAgcaucAGAGa--- -3'
miRNA:   3'- cAGUAGUUGUUAUGgAAU-----UCUCaauu -5'
28278 5' -40.7 NC_005902.1 + 150196 0.66 1
Target:  5'- uGUCAUCAACAAUGCauu-AGuGUc-- -3'
miRNA:   3'- -CAGUAGUUGUUAUGgaauUCuCAauu -5'
28278 5' -40.7 NC_005902.1 + 150069 0.84 0.938237
Target:  5'- uGUCAUCAACGAUGuuUUAGGAGUUu- -3'
miRNA:   3'- -CAGUAGUUGUUAUggAAUUCUCAAuu -5'
28278 5' -40.7 NC_005902.1 + 149938 0.78 0.996113
Target:  5'- uGUCAUCAACcacACCUUAGGuGUUAAa -3'
miRNA:   3'- -CAGUAGUUGuuaUGGAAUUCuCAAUU- -5'
28278 5' -40.7 NC_005902.1 + 149483 0.67 1
Target:  5'- aUCAUCGAUGAUGUCUUAAGuGUa-- -3'
miRNA:   3'- cAGUAGUUGUUAUGGAAUUCuCAauu -5'
28278 5' -40.7 NC_005902.1 + 149287 0.82 0.972075
Target:  5'- aUCAUCGAUGAUGCCUUAGGAuUUAAa -3'
miRNA:   3'- cAGUAGUUGUUAUGGAAUUCUcAAUU- -5'
28278 5' -40.7 NC_005902.1 + 149174 0.73 0.999969
Target:  5'- aUCAUCGAUGAcAUUUUAGGAGUUAAu -3'
miRNA:   3'- cAGUAGUUGUUaUGGAAUUCUCAAUU- -5'
28278 5' -40.7 NC_005902.1 + 148321 0.73 0.999958
Target:  5'- uUUAUCAACAcUGCCUUAAGuuUUAAa -3'
miRNA:   3'- cAGUAGUUGUuAUGGAAUUCucAAUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.