miRNA display CGI


Results 1 - 20 of 220 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28278 5' -40.7 NC_005902.1 + 184659 0.89 0.741753
Target:  5'- aUCAUUAACAAcACCUUAAGAGUUAAa -3'
miRNA:   3'- cAGUAGUUGUUaUGGAAUUCUCAAUU- -5'
28278 5' -40.7 NC_005902.1 + 184626 0.69 1
Target:  5'- cUCAUCGuauAUAgCUUAGGGGUUAAa -3'
miRNA:   3'- cAGUAGUuguUAUgGAAUUCUCAAUU- -5'
28278 5' -40.7 NC_005902.1 + 181493 0.79 0.991303
Target:  5'- uGUUAUCGACAAUGCUUUAGaAGUUAAa -3'
miRNA:   3'- -CAGUAGUUGUUAUGGAAUUcUCAAUU- -5'
28278 5' -40.7 NC_005902.1 + 181317 0.72 0.999989
Target:  5'- cGUCAUCAAUAAUAU----AGAGUUAAa -3'
miRNA:   3'- -CAGUAGUUGUUAUGgaauUCUCAAUU- -5'
28278 5' -40.7 NC_005902.1 + 181137 0.71 0.999999
Target:  5'- -aUAUCAcugUAAUGCUUUGAGAGUUAAa -3'
miRNA:   3'- caGUAGUu--GUUAUGGAAUUCUCAAUU- -5'
28278 5' -40.7 NC_005902.1 + 180991 0.8 0.984786
Target:  5'- aUCAUUGACAAcGCUUUAGGAGUUAAa -3'
miRNA:   3'- cAGUAGUUGUUaUGGAAUUCUCAAUU- -5'
28278 5' -40.7 NC_005902.1 + 177479 0.94 0.536974
Target:  5'- aGUUGUCAACAAUGCUUUGAGAGUUAGa -3'
miRNA:   3'- -CAGUAGUUGUUAUGGAAUUCUCAAUU- -5'
28278 5' -40.7 NC_005902.1 + 176154 0.82 0.972075
Target:  5'- aUUGUUGAUGAUACCUUAGGAGUUAAa -3'
miRNA:   3'- cAGUAGUUGUUAUGGAAUUCUCAAUU- -5'
28278 5' -40.7 NC_005902.1 + 175957 0.77 0.997751
Target:  5'- aUCAUCAACAAUGCUUUGuGGuGUUGAu -3'
miRNA:   3'- cAGUAGUUGUUAUGGAAU-UCuCAAUU- -5'
28278 5' -40.7 NC_005902.1 + 175144 0.76 0.999201
Target:  5'- -aUAUCAAUGAUAUUUUAGGAGUUAAu -3'
miRNA:   3'- caGUAGUUGUUAUGGAAUUCUCAAUU- -5'
28278 5' -40.7 NC_005902.1 + 174700 0.75 0.999817
Target:  5'- cGUUAUUGAUGAUGUCUUAAGAGUUAAu -3'
miRNA:   3'- -CAGUAGUUGUUAUGGAAUUCUCAAUU- -5'
28278 5' -40.7 NC_005902.1 + 172698 0.9 0.719604
Target:  5'- uGUUGUCAAUGAUGCCUUAGGGGUUAAc -3'
miRNA:   3'- -CAGUAGUUGUUAUGGAAUUCUCAAUU- -5'
28278 5' -40.7 NC_005902.1 + 169883 0.84 0.920698
Target:  5'- uGUCAUUGAUGAcGCCUUAAGAGUUAAa -3'
miRNA:   3'- -CAGUAGUUGUUaUGGAAUUCUCAAUU- -5'
28278 5' -40.7 NC_005902.1 + 169780 0.68 1
Target:  5'- uGUCAUCAACAAUGCUUcacauuGUUAu -3'
miRNA:   3'- -CAGUAGUUGUUAUGGAauucu-CAAUu -5'
28278 5' -40.7 NC_005902.1 + 169288 0.68 1
Target:  5'- uGUC-UCAACGAcGCCUUAAGAa---- -3'
miRNA:   3'- -CAGuAGUUGUUaUGGAAUUCUcaauu -5'
28278 5' -40.7 NC_005902.1 + 167522 0.94 0.525838
Target:  5'- aUCAUUAAUAAUGCCUUAGGAGUUAAa -3'
miRNA:   3'- cAGUAGUUGUUAUGGAAUUCUCAAUU- -5'
28278 5' -40.7 NC_005902.1 + 167421 0.84 0.938237
Target:  5'- uGUUGUaAACAAUGCCUUAGGAGUUAAc -3'
miRNA:   3'- -CAGUAgUUGUUAUGGAAUUCUCAAUU- -5'
28278 5' -40.7 NC_005902.1 + 167340 0.7 1
Target:  5'- aUUAUCAAUGAUGCUUUAGGAaUUAAa -3'
miRNA:   3'- cAGUAGUUGUUAUGGAAUUCUcAAUU- -5'
28278 5' -40.7 NC_005902.1 + 166092 0.71 0.999999
Target:  5'- uGUCAUUAACAAUAgUau-GGAGUUGAa -3'
miRNA:   3'- -CAGUAGUUGUUAUgGaauUCUCAAUU- -5'
28278 5' -40.7 NC_005902.1 + 165993 0.78 0.995386
Target:  5'- aUCAUCAAUGAUGuuUUAGGAGUUAu -3'
miRNA:   3'- cAGUAGUUGUUAUggAAUUCUCAAUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.