miRNA display CGI


Results 1 - 20 of 154 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28279 3' -45.1 NC_005902.1 + 67061 0.66 0.999999
Target:  5'- uUACCCUUUAACUCcACauuauCAUCAa--- -3'
miRNA:   3'- -AUGGGAAAUUGAGaUGc----GUAGUaacu -5'
28279 3' -45.1 NC_005902.1 + 76004 0.66 0.999998
Target:  5'- uUACCCUUUAAUUcCacaugucauuaacaaUGCGUuguGUCAUUGAu -3'
miRNA:   3'- -AUGGGAAAUUGA-G---------------AUGCG---UAGUAACU- -5'
28279 3' -45.1 NC_005902.1 + 113733 0.66 0.999998
Target:  5'- --aCCUUUAACUCcUAaagcaGCAUCAUUa- -3'
miRNA:   3'- augGGAAAUUGAG-AUg----CGUAGUAAcu -5'
28279 3' -45.1 NC_005902.1 + 134478 0.66 0.999997
Target:  5'- aUGCCUUaggaguuaaagagUUAACUCUuaaaGCAUUGUUGAu -3'
miRNA:   3'- -AUGGGA-------------AAUUGAGAug--CGUAGUAACU- -5'
28279 3' -45.1 NC_005902.1 + 165329 0.66 0.999997
Target:  5'- aUGCCCUuaaauUUGAUUCUGCGUGU-AUUGu -3'
miRNA:   3'- -AUGGGA-----AAUUGAGAUGCGUAgUAACu -5'
28279 3' -45.1 NC_005902.1 + 11437 0.66 0.999997
Target:  5'- aACUCUUUAAUUCUuaaaaaGUAUUGUUGAu -3'
miRNA:   3'- aUGGGAAAUUGAGAug----CGUAGUAACU- -5'
28279 3' -45.1 NC_005902.1 + 26428 0.66 0.999996
Target:  5'- aACCCUUUAAUuUCUAagGCAUUAUcaaUGAc -3'
miRNA:   3'- aUGGGAAAUUG-AGAUg-CGUAGUA---ACU- -5'
28279 3' -45.1 NC_005902.1 + 33492 0.66 0.999996
Target:  5'- aAUCCUUUAACUCUAUauuGUCAUcGAc -3'
miRNA:   3'- aUGGGAAAUUGAGAUGcg-UAGUAaCU- -5'
28279 3' -45.1 NC_005902.1 + 93721 0.66 0.999994
Target:  5'- aACCCccUGACUCcuaaaGUGUCAUUGAc -3'
miRNA:   3'- aUGGGaaAUUGAGaug--CGUAGUAACU- -5'
28279 3' -45.1 NC_005902.1 + 169898 0.66 0.999994
Target:  5'- aUACCUUUUAAUUC---GUGUCAUUGAu -3'
miRNA:   3'- -AUGGGAAAUUGAGaugCGUAGUAACU- -5'
28279 3' -45.1 NC_005902.1 + 180882 0.66 0.999994
Target:  5'- aACCCUUUAACaUCUAaGCAauaUCAcaagUGAg -3'
miRNA:   3'- aUGGGAAAUUG-AGAUgCGU---AGUa---ACU- -5'
28279 3' -45.1 NC_005902.1 + 143958 0.66 0.999994
Target:  5'- aACCCcUUAACUCaAgGCAUUAUcaaUGAc -3'
miRNA:   3'- aUGGGaAAUUGAGaUgCGUAGUA---ACU- -5'
28279 3' -45.1 NC_005902.1 + 79324 0.66 0.999994
Target:  5'- aAUCCUUUGACUCUuaaaAUGCuAUCAauaacacuUUGAg -3'
miRNA:   3'- aUGGGAAAUUGAGA----UGCG-UAGU--------AACU- -5'
28279 3' -45.1 NC_005902.1 + 40732 0.66 0.999994
Target:  5'- aUACCCuUUUAACUCcAUGCuauuGUCAaUGAu -3'
miRNA:   3'- -AUGGG-AAAUUGAGaUGCG----UAGUaACU- -5'
28279 3' -45.1 NC_005902.1 + 10797 0.66 0.999994
Target:  5'- aAUCUUUUAACUUUuaaaGUAUCGUUGGu -3'
miRNA:   3'- aUGGGAAAUUGAGAug--CGUAGUAACU- -5'
28279 3' -45.1 NC_005902.1 + 87004 0.66 0.999994
Target:  5'- aAUCCUUUAAUccCUAagGUAUCAUUGAu -3'
miRNA:   3'- aUGGGAAAUUGa-GAUg-CGUAGUAACU- -5'
28279 3' -45.1 NC_005902.1 + 180955 0.67 0.999992
Target:  5'- aUACCCUUUAACccaugCUGuugucaacgacaaaGUAUCAUUGAc -3'
miRNA:   3'- -AUGGGAAAUUGa----GAUg-------------CGUAGUAACU- -5'
28279 3' -45.1 NC_005902.1 + 25181 0.67 0.999991
Target:  5'- aAUCCUUUAACUCaUAU-CAUUGUUGAu -3'
miRNA:   3'- aUGGGAAAUUGAG-AUGcGUAGUAACU- -5'
28279 3' -45.1 NC_005902.1 + 10091 0.67 0.999991
Target:  5'- --aCCUUUAAC-CUaaAUGUAUCAUUGGu -3'
miRNA:   3'- augGGAAAUUGaGA--UGCGUAGUAACU- -5'
28279 3' -45.1 NC_005902.1 + 143544 0.67 0.999991
Target:  5'- gUACCUUUUAACUCca--CAUCAUUGu -3'
miRNA:   3'- -AUGGGAAAUUGAGaugcGUAGUAACu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.