miRNA display CGI


Results 1 - 20 of 133 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28279 5' -40.5 NC_005902.1 + 167525 0.66 1
Target:  5'- -aUUAAUaAUGcCUUAGGAGUUAAAGc -3'
miRNA:   3'- acAGUUAcUGCaGAAUUCUCAAUUUC- -5'
28279 5' -40.5 NC_005902.1 + 181187 0.67 1
Target:  5'- uUGUCAAUGAuacuuUGUCgUUGAcaacagcauGGGUUAAAGg -3'
miRNA:   3'- -ACAGUUACU-----GCAG-AAUU---------CUCAAUUUC- -5'
28279 5' -40.5 NC_005902.1 + 76692 0.68 1
Target:  5'- -uUCAGaGAUGgaauauugcuuuaacUCUUGAGAGUUAAAGc -3'
miRNA:   3'- acAGUUaCUGC---------------AGAAUUCUCAAUUUC- -5'
28279 5' -40.5 NC_005902.1 + 68038 0.68 1
Target:  5'- aUGUCAuUGACaaugcUUUAGGAGUUAAAa -3'
miRNA:   3'- -ACAGUuACUGca---GAAUUCUCAAUUUc -5'
28279 5' -40.5 NC_005902.1 + 48276 0.68 1
Target:  5'- uUGUCAAUGACacaaaGUauugcugacgaugcCUUAGGAGUUAuaaAAGg -3'
miRNA:   3'- -ACAGUUACUG-----CA--------------GAAUUCUCAAU---UUC- -5'
28279 5' -40.5 NC_005902.1 + 39613 0.68 1
Target:  5'- cUGUCAGUGACcuuucaGUUUUuaaAAGAGUUAu-- -3'
miRNA:   3'- -ACAGUUACUG------CAGAA---UUCUCAAUuuc -5'
28279 5' -40.5 NC_005902.1 + 177488 0.68 1
Target:  5'- cUGUUGAUGAguUGUCaacaaugcuUUGAGAGUUAGAa -3'
miRNA:   3'- -ACAGUUACU--GCAG---------AAUUCUCAAUUUc -5'
28279 5' -40.5 NC_005902.1 + 95689 0.68 1
Target:  5'- uUGUUGAUGAUgcuuuGUgguauuaaucauacCUUAAGAGUUAAGGg -3'
miRNA:   3'- -ACAGUUACUG-----CA--------------GAAUUCUCAAUUUC- -5'
28279 5' -40.5 NC_005902.1 + 16031 0.69 1
Target:  5'- -aUCAAUGAUGgggCaucauuaacaaugccUUAGGAGUUAAAGg -3'
miRNA:   3'- acAGUUACUGCa--G---------------AAUUCUCAAUUUC- -5'
28279 5' -40.5 NC_005902.1 + 104147 0.67 1
Target:  5'- -aUCAAUGAUGcUUUAAGAaUUAAAGg -3'
miRNA:   3'- acAGUUACUGCaGAAUUCUcAAUUUC- -5'
28279 5' -40.5 NC_005902.1 + 171017 0.67 1
Target:  5'- gUGUCAuUGAUgcuGUUUUAAGuGUUAAAa -3'
miRNA:   3'- -ACAGUuACUG---CAGAAUUCuCAAUUUc -5'
28279 5' -40.5 NC_005902.1 + 58543 0.67 1
Target:  5'- gUGUUAuUGAuaaCGcCUUGGGAGUUAAAc -3'
miRNA:   3'- -ACAGUuACU---GCaGAAUUCUCAAUUUc -5'
28279 5' -40.5 NC_005902.1 + 158128 0.66 1
Target:  5'- -aUCGAUGACacau--GGAGUUAAAGg -3'
miRNA:   3'- acAGUUACUGcagaauUCUCAAUUUC- -5'
28279 5' -40.5 NC_005902.1 + 68451 0.66 1
Target:  5'- aUGUCAuuaAUGAUG-C---AGAGUUAAAGg -3'
miRNA:   3'- -ACAGU---UACUGCaGaauUCUCAAUUUC- -5'
28279 5' -40.5 NC_005902.1 + 93703 0.66 1
Target:  5'- gUGUCAuUGACaauaauguAGAGUUAAAGg -3'
miRNA:   3'- -ACAGUuACUGcagaau--UCUCAAUUUC- -5'
28279 5' -40.5 NC_005902.1 + 37549 0.66 1
Target:  5'- -cUCGAUGACGcCUUguguuauugaugacaAcauGGAGUUAAAGg -3'
miRNA:   3'- acAGUUACUGCaGAA---------------U---UCUCAAUUUC- -5'
28279 5' -40.5 NC_005902.1 + 85618 0.66 1
Target:  5'- uUGUCAAUGAUGaCaUAAauuAGUUAAAGg -3'
miRNA:   3'- -ACAGUUACUGCaGaAUUc--UCAAUUUC- -5'
28279 5' -40.5 NC_005902.1 + 63324 0.66 1
Target:  5'- -aUCAAUGAUGaugcCUUAAaAGUUAAAGg -3'
miRNA:   3'- acAGUUACUGCa---GAAUUcUCAAUUUC- -5'
28279 5' -40.5 NC_005902.1 + 12888 0.67 1
Target:  5'- cUGUCAcuAUGcucacuuguAUGUCUUAAGAuUUAAAGg -3'
miRNA:   3'- -ACAGU--UAC---------UGCAGAAUUCUcAAUUUC- -5'
28279 5' -40.5 NC_005902.1 + 43801 0.67 1
Target:  5'- -aUCGAUGACaUUUUAGGAGUUu--- -3'
miRNA:   3'- acAGUUACUGcAGAAUUCUCAAuuuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.