miRNA display CGI


Results 1 - 20 of 122 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28280 3' -38.9 NC_005902.1 + 61623 0.66 1
Target:  5'- cUUUAACAUCUaAGCUAUAUAcaaaugauUGAGUa -3'
miRNA:   3'- -AAAUUGUGGAcUUGAUAUAU--------ACUUAc -5'
28280 3' -38.9 NC_005902.1 + 80984 0.67 1
Target:  5'- cUUUAACACCUaAGCUAUAUAc----- -3'
miRNA:   3'- -AAAUUGUGGAcUUGAUAUAUacuuac -5'
28280 3' -38.9 NC_005902.1 + 114645 0.67 1
Target:  5'- cUUUAACACCUaAGCUAUAUAc----- -3'
miRNA:   3'- -AAAUUGUGGAcUUGAUAUAUacuuac -5'
28280 3' -38.9 NC_005902.1 + 167392 0.68 1
Target:  5'- uUUUAACACCUaAGCUAUAUAc----- -3'
miRNA:   3'- -AAAUUGUGGAcUUGAUAUAUacuuac -5'
28280 3' -38.9 NC_005902.1 + 142234 0.68 1
Target:  5'- uUUUAACACCUaAGCUAUAUAc----- -3'
miRNA:   3'- -AAAUUGUGGAcUUGAUAUAUacuuac -5'
28280 3' -38.9 NC_005902.1 + 162270 0.68 1
Target:  5'- cUUUAACAUCUaAACUAUAUaAUGAAc- -3'
miRNA:   3'- -AAAUUGUGGAcUUGAUAUA-UACUUac -5'
28280 3' -38.9 NC_005902.1 + 52574 0.68 1
Target:  5'- cUUUAACACCUaAGCUAUAUAcaaauaaauguagcGAGUGa -3'
miRNA:   3'- -AAAUUGUGGAcUUGAUAUAUa-------------CUUAC- -5'
28280 3' -38.9 NC_005902.1 + 71704 0.68 1
Target:  5'- cUUUAACACCUaGGCUAUAUAa----- -3'
miRNA:   3'- -AAAUUGUGGAcUUGAUAUAUacuuac -5'
28280 3' -38.9 NC_005902.1 + 104412 0.68 1
Target:  5'- cUUUAACACCUaAGCUAUAUAa----- -3'
miRNA:   3'- -AAAUUGUGGAcUUGAUAUAUacuuac -5'
28280 3' -38.9 NC_005902.1 + 42475 0.67 1
Target:  5'- cUUUAACACCUaAGCUAUAUAc----- -3'
miRNA:   3'- -AAAUUGUGGAcUUGAUAUAUacuuac -5'
28280 3' -38.9 NC_005902.1 + 39515 0.67 1
Target:  5'- cUUUAACACCUaAGCUAUAUAc----- -3'
miRNA:   3'- -AAAUUGUGGAcUUGAUAUAUacuuac -5'
28280 3' -38.9 NC_005902.1 + 29020 0.67 1
Target:  5'- cUUUAACACCUaAGCUAUAUAc----- -3'
miRNA:   3'- -AAAUUGUGGAcUUGAUAUAUacuuac -5'
28280 3' -38.9 NC_005902.1 + 98888 0.66 1
Target:  5'- cUUAAUACCUaAGCUAUAUAUa---- -3'
miRNA:   3'- aAAUUGUGGAcUUGAUAUAUAcuuac -5'
28280 3' -38.9 NC_005902.1 + 87310 0.66 1
Target:  5'- cUUUAACcCCUaAGCUAUAUaAUGAGUa -3'
miRNA:   3'- -AAAUUGuGGAcUUGAUAUA-UACUUAc -5'
28280 3' -38.9 NC_005902.1 + 169732 0.66 1
Target:  5'- -gUAACACCUGAGaUAUAUAgcucaGGUGu -3'
miRNA:   3'- aaAUUGUGGACUUgAUAUAUac---UUAC- -5'
28280 3' -38.9 NC_005902.1 + 146837 0.66 1
Target:  5'- --gAAUACCUaAGCUAUAUAcGAGUa -3'
miRNA:   3'- aaaUUGUGGAcUUGAUAUAUaCUUAc -5'
28280 3' -38.9 NC_005902.1 + 50291 0.67 1
Target:  5'- gUUAAUACCUaAGCUAUAUacaaGUGAGc- -3'
miRNA:   3'- aAAUUGUGGAcUUGAUAUA----UACUUac -5'
28280 3' -38.9 NC_005902.1 + 116877 0.67 1
Target:  5'- gUUUAACACCUaAACUAUAUGc----- -3'
miRNA:   3'- -AAAUUGUGGAcUUGAUAUAUacuuac -5'
28280 3' -38.9 NC_005902.1 + 92410 0.67 1
Target:  5'- aUUUAAUACCUaAGCUAUAUAcaaacaaucauaaUGAGUa -3'
miRNA:   3'- -AAAUUGUGGAcUUGAUAUAU-------------ACUUAc -5'
28280 3' -38.9 NC_005902.1 + 122038 0.67 1
Target:  5'- aUUUAACACCauuuauuauaAGCUAaAUGUGAAUGa -3'
miRNA:   3'- -AAAUUGUGGac--------UUGAUaUAUACUUAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.