miRNA display CGI


Results 1 - 20 of 125 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28280 5' -48.8 NC_005902.1 + 81315 0.66 0.99894
Target:  5'- uAGCAagUGAGUAUAUAGCUUAaaaGUUAa -3'
miRNA:   3'- -UCGU--ACUCGUAUAUCGAGUccaCAAU- -5'
28280 5' -48.8 NC_005902.1 + 85919 0.66 0.998918
Target:  5'- aAGCuauauAUGAaCAuauauaaUAUAGCUUAGGUGUUAa -3'
miRNA:   3'- -UCG-----UACUcGU-------AUAUCGAGUCCACAAU- -5'
28280 5' -48.8 NC_005902.1 + 86252 0.66 0.998918
Target:  5'- aAGCuauauAUGAaCAuauauaaUAUAGCUUAGGUGUUAa -3'
miRNA:   3'- -UCG-----UACUcGU-------AUAUCGAGUCCACAAU- -5'
28280 5' -48.8 NC_005902.1 + 170799 0.66 0.998704
Target:  5'- aAGCAU----AUAUAGgUCAGGUGUUAc -3'
miRNA:   3'- -UCGUAcucgUAUAUCgAGUCCACAAU- -5'
28280 5' -48.8 NC_005902.1 + 85274 0.66 0.998426
Target:  5'- gAGCAUGuaAGUAUAUAGCcUAGaUGUUAa -3'
miRNA:   3'- -UCGUAC--UCGUAUAUCGaGUCcACAAU- -5'
28280 5' -48.8 NC_005902.1 + 136787 0.66 0.998426
Target:  5'- cAGCAaauaAGUAUAUAaCUUAGGUGUUAa -3'
miRNA:   3'- -UCGUac--UCGUAUAUcGAGUCCACAAU- -5'
28280 5' -48.8 NC_005902.1 + 48136 0.66 0.998426
Target:  5'- --aAUGAGCAcauaUAUAGCUUAGaUGUUAa -3'
miRNA:   3'- ucgUACUCGU----AUAUCGAGUCcACAAU- -5'
28280 5' -48.8 NC_005902.1 + 37183 0.67 0.997717
Target:  5'- uAGCAaauaAGUAUAUAGCUUAGGUa--- -3'
miRNA:   3'- -UCGUac--UCGUAUAUCGAGUCCAcaau -5'
28280 5' -48.8 NC_005902.1 + 136080 0.67 0.997717
Target:  5'- uGCuUGuuuGUAUAUAGCUUAGGaGUUAa -3'
miRNA:   3'- uCGuACu--CGUAUAUCGAGUCCaCAAU- -5'
28280 5' -48.8 NC_005902.1 + 101593 0.67 0.997675
Target:  5'- uGGCGUGuuuGCAUAUAGCuggaccaUCGGGUuuGUa- -3'
miRNA:   3'- -UCGUACu--CGUAUAUCG-------AGUCCA--CAau -5'
28280 5' -48.8 NC_005902.1 + 65975 0.67 0.996758
Target:  5'- uGC-UGuGUucauucauAUAUAGUUCAGGUGUUAa -3'
miRNA:   3'- uCGuACuCG--------UAUAUCGAGUCCACAAU- -5'
28280 5' -48.8 NC_005902.1 + 20314 0.67 0.995488
Target:  5'- cGCuuauuUGuaUAUAUAGCUUAGGUGUUAa -3'
miRNA:   3'- uCGu----ACucGUAUAUCGAGUCCACAAU- -5'
28280 5' -48.8 NC_005902.1 + 156423 0.67 0.995488
Target:  5'- cAGUgaAUGAGUAUAUAGCUUAaaUGUUAa -3'
miRNA:   3'- -UCG--UACUCGUAUAUCGAGUccACAAU- -5'
28280 5' -48.8 NC_005902.1 + 136207 0.67 0.995488
Target:  5'- cGCaAUGAGUgaAUAUA-CUUAGGUGUUAa -3'
miRNA:   3'- uCG-UACUCG--UAUAUcGAGUCCACAAU- -5'
28280 5' -48.8 NC_005902.1 + 7814 0.67 0.995488
Target:  5'- --aAUGAGUAUAUAaUUUAGGUGUUAa -3'
miRNA:   3'- ucgUACUCGUAUAUcGAGUCCACAAU- -5'
28280 5' -48.8 NC_005902.1 + 3289 0.67 0.995488
Target:  5'- --aGUGuaUAUAUAGCUUAGGUGUUAa -3'
miRNA:   3'- ucgUACucGUAUAUCGAGUCCACAAU- -5'
28280 5' -48.8 NC_005902.1 + 41192 0.67 0.995488
Target:  5'- aAGCuauauGUGAGUguAUAUAGCUUAGGUaUUAa -3'
miRNA:   3'- -UCG-----UACUCG--UAUAUCGAGUCCAcAAU- -5'
28280 5' -48.8 NC_005902.1 + 136267 0.68 0.994716
Target:  5'- aGGUAU-AGCAaacaaauaUAUAGUUUAGGUGUUGa -3'
miRNA:   3'- -UCGUAcUCGU--------AUAUCGAGUCCACAAU- -5'
28280 5' -48.8 NC_005902.1 + 50224 0.68 0.993839
Target:  5'- aAGCua---UAUAUAGCUUAGGUGUUAa -3'
miRNA:   3'- -UCGuacucGUAUAUCGAGUCCACAAU- -5'
28280 5' -48.8 NC_005902.1 + 50425 0.68 0.993839
Target:  5'- aAGCua---UAUAUAGCUUAGGUGUUAa -3'
miRNA:   3'- -UCGuacucGUAUAUCGAGUCCACAAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.