Results 1 - 20 of 125 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
28280 | 5' | -48.8 | NC_005902.1 | + | 81315 | 0.66 | 0.99894 |
Target: 5'- uAGCAagUGAGUAUAUAGCUUAaaaGUUAa -3' miRNA: 3'- -UCGU--ACUCGUAUAUCGAGUccaCAAU- -5' |
|||||||
28280 | 5' | -48.8 | NC_005902.1 | + | 86252 | 0.66 | 0.998918 |
Target: 5'- aAGCuauauAUGAaCAuauauaaUAUAGCUUAGGUGUUAa -3' miRNA: 3'- -UCG-----UACUcGU-------AUAUCGAGUCCACAAU- -5' |
|||||||
28280 | 5' | -48.8 | NC_005902.1 | + | 85919 | 0.66 | 0.998918 |
Target: 5'- aAGCuauauAUGAaCAuauauaaUAUAGCUUAGGUGUUAa -3' miRNA: 3'- -UCG-----UACUcGU-------AUAUCGAGUCCACAAU- -5' |
|||||||
28280 | 5' | -48.8 | NC_005902.1 | + | 170799 | 0.66 | 0.998704 |
Target: 5'- aAGCAU----AUAUAGgUCAGGUGUUAc -3' miRNA: 3'- -UCGUAcucgUAUAUCgAGUCCACAAU- -5' |
|||||||
28280 | 5' | -48.8 | NC_005902.1 | + | 136787 | 0.66 | 0.998426 |
Target: 5'- cAGCAaauaAGUAUAUAaCUUAGGUGUUAa -3' miRNA: 3'- -UCGUac--UCGUAUAUcGAGUCCACAAU- -5' |
|||||||
28280 | 5' | -48.8 | NC_005902.1 | + | 85274 | 0.66 | 0.998426 |
Target: 5'- gAGCAUGuaAGUAUAUAGCcUAGaUGUUAa -3' miRNA: 3'- -UCGUAC--UCGUAUAUCGaGUCcACAAU- -5' |
|||||||
28280 | 5' | -48.8 | NC_005902.1 | + | 48136 | 0.66 | 0.998426 |
Target: 5'- --aAUGAGCAcauaUAUAGCUUAGaUGUUAa -3' miRNA: 3'- ucgUACUCGU----AUAUCGAGUCcACAAU- -5' |
|||||||
28280 | 5' | -48.8 | NC_005902.1 | + | 37183 | 0.67 | 0.997717 |
Target: 5'- uAGCAaauaAGUAUAUAGCUUAGGUa--- -3' miRNA: 3'- -UCGUac--UCGUAUAUCGAGUCCAcaau -5' |
|||||||
28280 | 5' | -48.8 | NC_005902.1 | + | 136080 | 0.67 | 0.997717 |
Target: 5'- uGCuUGuuuGUAUAUAGCUUAGGaGUUAa -3' miRNA: 3'- uCGuACu--CGUAUAUCGAGUCCaCAAU- -5' |
|||||||
28280 | 5' | -48.8 | NC_005902.1 | + | 101593 | 0.67 | 0.997675 |
Target: 5'- uGGCGUGuuuGCAUAUAGCuggaccaUCGGGUuuGUa- -3' miRNA: 3'- -UCGUACu--CGUAUAUCG-------AGUCCA--CAau -5' |
|||||||
28280 | 5' | -48.8 | NC_005902.1 | + | 65975 | 0.67 | 0.996758 |
Target: 5'- uGC-UGuGUucauucauAUAUAGUUCAGGUGUUAa -3' miRNA: 3'- uCGuACuCG--------UAUAUCGAGUCCACAAU- -5' |
|||||||
28280 | 5' | -48.8 | NC_005902.1 | + | 136207 | 0.67 | 0.995488 |
Target: 5'- cGCaAUGAGUgaAUAUA-CUUAGGUGUUAa -3' miRNA: 3'- uCG-UACUCG--UAUAUcGAGUCCACAAU- -5' |
|||||||
28280 | 5' | -48.8 | NC_005902.1 | + | 7814 | 0.67 | 0.995488 |
Target: 5'- --aAUGAGUAUAUAaUUUAGGUGUUAa -3' miRNA: 3'- ucgUACUCGUAUAUcGAGUCCACAAU- -5' |
|||||||
28280 | 5' | -48.8 | NC_005902.1 | + | 3289 | 0.67 | 0.995488 |
Target: 5'- --aGUGuaUAUAUAGCUUAGGUGUUAa -3' miRNA: 3'- ucgUACucGUAUAUCGAGUCCACAAU- -5' |
|||||||
28280 | 5' | -48.8 | NC_005902.1 | + | 20314 | 0.67 | 0.995488 |
Target: 5'- cGCuuauuUGuaUAUAUAGCUUAGGUGUUAa -3' miRNA: 3'- uCGu----ACucGUAUAUCGAGUCCACAAU- -5' |
|||||||
28280 | 5' | -48.8 | NC_005902.1 | + | 41192 | 0.67 | 0.995488 |
Target: 5'- aAGCuauauGUGAGUguAUAUAGCUUAGGUaUUAa -3' miRNA: 3'- -UCG-----UACUCG--UAUAUCGAGUCCAcAAU- -5' |
|||||||
28280 | 5' | -48.8 | NC_005902.1 | + | 156423 | 0.67 | 0.995488 |
Target: 5'- cAGUgaAUGAGUAUAUAGCUUAaaUGUUAa -3' miRNA: 3'- -UCG--UACUCGUAUAUCGAGUccACAAU- -5' |
|||||||
28280 | 5' | -48.8 | NC_005902.1 | + | 136267 | 0.68 | 0.994716 |
Target: 5'- aGGUAU-AGCAaacaaauaUAUAGUUUAGGUGUUGa -3' miRNA: 3'- -UCGUAcUCGU--------AUAUCGAGUCCACAAU- -5' |
|||||||
28280 | 5' | -48.8 | NC_005902.1 | + | 50425 | 0.68 | 0.993839 |
Target: 5'- aAGCua---UAUAUAGCUUAGGUGUUAa -3' miRNA: 3'- -UCGuacucGUAUAUCGAGUCCACAAU- -5' |
|||||||
28280 | 5' | -48.8 | NC_005902.1 | + | 50224 | 0.68 | 0.993839 |
Target: 5'- aAGCua---UAUAUAGCUUAGGUGUUAa -3' miRNA: 3'- -UCGuacucGUAUAUCGAGUCCACAAU- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home