miRNA display CGI


Results 1 - 20 of 474 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28284 3' -38.2 NC_005902.1 + 32868 0.66 1
Target:  5'- uUUUAAUACCUAAaGCU-UAUACuAAUu -3'
miRNA:   3'- gAAAUUGUGGAUU-CGAuAUAUGuUUG- -5'
28284 3' -38.2 NC_005902.1 + 11252 0.69 1
Target:  5'- -gUUAAUA-CUAAGCUAUAUACuuAUu -3'
miRNA:   3'- gaAAUUGUgGAUUCGAUAUAUGuuUG- -5'
28284 3' -38.2 NC_005902.1 + 104325 0.69 1
Target:  5'- cCUUUAACAUCUAAGCcaugaguaaGUAUAUAGc- -3'
miRNA:   3'- -GAAAUUGUGGAUUCGa--------UAUAUGUUug -5'
28284 3' -38.2 NC_005902.1 + 63728 0.69 1
Target:  5'- gUUUAACcUCUAGGUUAUAUACccACu -3'
miRNA:   3'- gAAAUUGuGGAUUCGAUAUAUGuuUG- -5'
28284 3' -38.2 NC_005902.1 + 48631 0.69 1
Target:  5'- uUUUAACccuuuACCUAAG-UAUAUACAAAa -3'
miRNA:   3'- gAAAUUG-----UGGAUUCgAUAUAUGUUUg -5'
28284 3' -38.2 NC_005902.1 + 155217 0.69 1
Target:  5'- uUUUAAUACCUAAaucAUAUAUAAACa -3'
miRNA:   3'- gAAAUUGUGGAUUcgaUAUAUGUUUG- -5'
28284 3' -38.2 NC_005902.1 + 101811 0.69 1
Target:  5'- ---aAAC-CCgaugguccAGCUAUAUGCAAACa -3'
miRNA:   3'- gaaaUUGuGGau------UCGAUAUAUGUUUG- -5'
28284 3' -38.2 NC_005902.1 + 105139 0.69 1
Target:  5'- -cUUAACcCUUAAGUUAUAUACucACu -3'
miRNA:   3'- gaAAUUGuGGAUUCGAUAUAUGuuUG- -5'
28284 3' -38.2 NC_005902.1 + 127443 0.69 1
Target:  5'- uUUUAACauuuuaaACUUAAGCUAUAaGCAAAg -3'
miRNA:   3'- gAAAUUG-------UGGAUUCGAUAUaUGUUUg -5'
28284 3' -38.2 NC_005902.1 + 166365 0.69 1
Target:  5'- -cUUAAUAUCUAAGCUAcAUGaauGAGCa -3'
miRNA:   3'- gaAAUUGUGGAUUCGAUaUAUg--UUUG- -5'
28284 3' -38.2 NC_005902.1 + 76251 0.68 1
Target:  5'- cCUUcAAUAUCUAAGCUAUAuUAUuuACu -3'
miRNA:   3'- -GAAaUUGUGGAUUCGAUAU-AUGuuUG- -5'
28284 3' -38.2 NC_005902.1 + 166452 0.67 1
Target:  5'- uCUUUAACGCauaAGGCU-UAUAUAAAUa -3'
miRNA:   3'- -GAAAUUGUGga-UUCGAuAUAUGUUUG- -5'
28284 3' -38.2 NC_005902.1 + 58534 0.66 1
Target:  5'- --aUAACGCCUuggGAGUUAaacUGUACuuACu -3'
miRNA:   3'- gaaAUUGUGGA---UUCGAU---AUAUGuuUG- -5'
28284 3' -38.2 NC_005902.1 + 3256 0.66 1
Target:  5'- uUUUAACAUCUAAaCUA--UACAAAUg -3'
miRNA:   3'- gAAAUUGUGGAUUcGAUauAUGUUUG- -5'
28284 3' -38.2 NC_005902.1 + 8073 0.66 1
Target:  5'- uUUUAACACCUGAuaUA-AUACcuGCa -3'
miRNA:   3'- gAAAUUGUGGAUUcgAUaUAUGuuUG- -5'
28284 3' -38.2 NC_005902.1 + 115398 0.67 1
Target:  5'- -aUUAACGCgUAAGCauauUGUGCAGc- -3'
miRNA:   3'- gaAAUUGUGgAUUCGau--AUAUGUUug -5'
28284 3' -38.2 NC_005902.1 + 169732 0.67 1
Target:  5'- --gUAACACCUGAGauaUAUAgcuCAggUg -3'
miRNA:   3'- gaaAUUGUGGAUUCg--AUAUau-GUuuG- -5'
28284 3' -38.2 NC_005902.1 + 47427 0.67 1
Target:  5'- ---aAAgGgUUAAGCUAUAUGCAAGu -3'
miRNA:   3'- gaaaUUgUgGAUUCGAUAUAUGUUUg -5'
28284 3' -38.2 NC_005902.1 + 69246 0.67 1
Target:  5'- aUUUAAUuCCUAAGUcuUAUACAAGu -3'
miRNA:   3'- gAAAUUGuGGAUUCGauAUAUGUUUg -5'
28284 3' -38.2 NC_005902.1 + 112398 0.67 1
Target:  5'- uUUUAACACaUAAGC-AUAUACucACu -3'
miRNA:   3'- gAAAUUGUGgAUUCGaUAUAUGuuUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.