miRNA display CGI


Results 1 - 20 of 474 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28284 3' -38.2 NC_005902.1 + 1147 1.05 0.31035
Target:  5'- cCUUUAAgACCUAAGCUGUAUACAAACa -3'
miRNA:   3'- -GAAAUUgUGGAUUCGAUAUAUGUUUG- -5'
28284 3' -38.2 NC_005902.1 + 1203 0.98 0.571746
Target:  5'- -gUUAACACCUAAGUUAUAUACAAAUa -3'
miRNA:   3'- gaAAUUGUGGAUUCGAUAUAUGUUUG- -5'
28284 3' -38.2 NC_005902.1 + 1263 0.94 0.755646
Target:  5'- uCUUcAACACCUAGGCUAUAUAUAAAUg -3'
miRNA:   3'- -GAAaUUGUGGAUUCGAUAUAUGUUUG- -5'
28284 3' -38.2 NC_005902.1 + 1412 0.94 0.766501
Target:  5'- uUUUAACcCCUAAGCUAUAUACGAAUg -3'
miRNA:   3'- gAAAUUGuGGAUUCGAUAUAUGUUUG- -5'
28284 3' -38.2 NC_005902.1 + 1712 0.82 0.997683
Target:  5'- uCUUUAAUAUCUAAGCUAUAU-UAAACc -3'
miRNA:   3'- -GAAAUUGUGGAUUCGAUAUAuGUUUG- -5'
28284 3' -38.2 NC_005902.1 + 3024 0.85 0.981978
Target:  5'- -aUUAACAUCUAAGCUAUAUACu--- -3'
miRNA:   3'- gaAAUUGUGGAUUCGAUAUAUGuuug -5'
28284 3' -38.2 NC_005902.1 + 3077 0.96 0.653201
Target:  5'- aUUUAACACCUAAGCUAUAUAUAcACu -3'
miRNA:   3'- gAAAUUGUGGAUUCGAUAUAUGUuUG- -5'
28284 3' -38.2 NC_005902.1 + 3256 0.66 1
Target:  5'- uUUUAACAUCUAAaCUA--UACAAAUg -3'
miRNA:   3'- gAAAUUGUGGAUUcGAUauAUGUUUG- -5'
28284 3' -38.2 NC_005902.1 + 3383 0.78 0.999922
Target:  5'- ----uACACCUAAGCUAUAcaUACAAc- -3'
miRNA:   3'- gaaauUGUGGAUUCGAUAU--AUGUUug -5'
28284 3' -38.2 NC_005902.1 + 3630 0.76 0.999995
Target:  5'- uUUUAAaggguuaaACUUAAGCUAUAUAUGAACa -3'
miRNA:   3'- gAAAUUg-------UGGAUUCGAUAUAUGUUUG- -5'
28284 3' -38.2 NC_005902.1 + 4198 0.7 1
Target:  5'- uUUUAAUAUUUAAGCUAUAUAa---- -3'
miRNA:   3'- gAAAUUGUGGAUUCGAUAUAUguuug -5'
28284 3' -38.2 NC_005902.1 + 4612 0.85 0.986149
Target:  5'- cCUUUAACAUCUAAGCgAUAUACuuACu -3'
miRNA:   3'- -GAAAUUGUGGAUUCGaUAUAUGuuUG- -5'
28284 3' -38.2 NC_005902.1 + 4776 0.84 0.993364
Target:  5'- uUUUAAC-CCUAcGCUAUAUACAAAUa -3'
miRNA:   3'- gAAAUUGuGGAUuCGAUAUAUGUUUG- -5'
28284 3' -38.2 NC_005902.1 + 5115 0.81 0.998736
Target:  5'- uCUUUAACAUCUAAGCaAUAUAUuuGCu -3'
miRNA:   3'- -GAAAUUGUGGAUUCGaUAUAUGuuUG- -5'
28284 3' -38.2 NC_005902.1 + 5650 0.75 0.999999
Target:  5'- cCUUUAACAaUUAAGCUAUAUACu--- -3'
miRNA:   3'- -GAAAUUGUgGAUUCGAUAUAUGuuug -5'
28284 3' -38.2 NC_005902.1 + 6177 0.78 0.999958
Target:  5'- uCUUUAACucuuaaggcauuAUUUAAGCUAUAUACAAAUa -3'
miRNA:   3'- -GAAAUUG------------UGGAUUCGAUAUAUGUUUG- -5'
28284 3' -38.2 NC_005902.1 + 6254 0.71 1
Target:  5'- -gUUAACACCgAAGCcaUAUAUACAc-- -3'
miRNA:   3'- gaAAUUGUGGaUUCG--AUAUAUGUuug -5'
28284 3' -38.2 NC_005902.1 + 6315 0.88 0.946281
Target:  5'- uCUUUAAgACCUAAGCcAUAUACAAAUg -3'
miRNA:   3'- -GAAAUUgUGGAUUCGaUAUAUGUUUG- -5'
28284 3' -38.2 NC_005902.1 + 6439 0.81 0.999184
Target:  5'- cCUUUAACAaCUAAGCUAUAUACu--- -3'
miRNA:   3'- -GAAAUUGUgGAUUCGAUAUAUGuuug -5'
28284 3' -38.2 NC_005902.1 + 6536 0.71 1
Target:  5'- gCUUUAAagaaUUAAGCUAUAUAUAAAUg -3'
miRNA:   3'- -GAAAUUgug-GAUUCGAUAUAUGUUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.