miRNA display CGI


Results 21 - 40 of 474 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28284 3' -38.2 NC_005902.1 + 6777 0.79 0.999895
Target:  5'- -gUUAACACCUAAGUUAuuUAUAUAuACu -3'
miRNA:   3'- gaAAUUGUGGAUUCGAU--AUAUGUuUG- -5'
28284 3' -38.2 NC_005902.1 + 7602 0.75 0.999999
Target:  5'- cCUUUAACACCUAAaUUAUAUACu--- -3'
miRNA:   3'- -GAAAUUGUGGAUUcGAUAUAUGuuug -5'
28284 3' -38.2 NC_005902.1 + 7837 0.78 0.99997
Target:  5'- uUUUAAUACUUAAaCUAUAUACAAAUg -3'
miRNA:   3'- gAAAUUGUGGAUUcGAUAUAUGUUUG- -5'
28284 3' -38.2 NC_005902.1 + 8073 0.66 1
Target:  5'- uUUUAACACCUGAuaUA-AUACcuGCa -3'
miRNA:   3'- gAAAUUGUGGAUUcgAUaUAUGuuUG- -5'
28284 3' -38.2 NC_005902.1 + 8112 0.69 1
Target:  5'- uUUUAAUAUaUAAGCUAUAUACu--- -3'
miRNA:   3'- gAAAUUGUGgAUUCGAUAUAUGuuug -5'
28284 3' -38.2 NC_005902.1 + 8175 0.76 0.999997
Target:  5'- --cUAACAUUUAAGCUAUAUACu--- -3'
miRNA:   3'- gaaAUUGUGGAUUCGAUAUAUGuuug -5'
28284 3' -38.2 NC_005902.1 + 8359 0.78 0.99997
Target:  5'- -aUUAAUAaCUAAGCUAUAUACGAGu -3'
miRNA:   3'- gaAAUUGUgGAUUCGAUAUAUGUUUg -5'
28284 3' -38.2 NC_005902.1 + 8417 0.9 0.91081
Target:  5'- uUUUAACACCUAAaCUAUAUACAAAUg -3'
miRNA:   3'- gAAAUUGUGGAUUcGAUAUAUGUUUG- -5'
28284 3' -38.2 NC_005902.1 + 8697 0.87 0.96384
Target:  5'- -gUUAACACUUAuGCUAUAUACAAAUa -3'
miRNA:   3'- gaAAUUGUGGAUuCGAUAUAUGUUUG- -5'
28284 3' -38.2 NC_005902.1 + 10388 0.72 1
Target:  5'- cCUUUAAUACUUAAaCUAUAUACucACu -3'
miRNA:   3'- -GAAAUUGUGGAUUcGAUAUAUGuuUG- -5'
28284 3' -38.2 NC_005902.1 + 11252 0.69 1
Target:  5'- -gUUAAUA-CUAAGCUAUAUACuuAUu -3'
miRNA:   3'- gaAAUUGUgGAUUCGAUAUAUGuuUG- -5'
28284 3' -38.2 NC_005902.1 + 11284 0.87 0.967511
Target:  5'- uCUUUAACACUUAAGUgUAUAUACAAAUa -3'
miRNA:   3'- -GAAAUUGUGGAUUCG-AUAUAUGUUUG- -5'
28284 3' -38.2 NC_005902.1 + 11408 0.9 0.888916
Target:  5'- uCUUUAACACUUAAGCUAUAUACu--- -3'
miRNA:   3'- -GAAAUUGUGGAUUCGAUAUAUGuuug -5'
28284 3' -38.2 NC_005902.1 + 11496 0.88 0.946281
Target:  5'- uUUUAAUAUCUAAGCUAUAUACuuACu -3'
miRNA:   3'- gAAAUUGUGGAUUCGAUAUAUGuuUG- -5'
28284 3' -38.2 NC_005902.1 + 12544 0.87 0.955649
Target:  5'- cCUUUAAUACCUAAaUUAUAUACAAACa -3'
miRNA:   3'- -GAAAUUGUGGAUUcGAUAUAUGUUUG- -5'
28284 3' -38.2 NC_005902.1 + 13184 0.97 0.629862
Target:  5'- cCUUUAACACCUAAGCUAUAUACc--- -3'
miRNA:   3'- -GAAAUUGUGGAUUCGAUAUAUGuuug -5'
28284 3' -38.2 NC_005902.1 + 13400 0.85 0.984167
Target:  5'- --cUAAUACCUAAGCUAUAUaugugaguauaACAAACa -3'
miRNA:   3'- gaaAUUGUGGAUUCGAUAUA-----------UGUUUG- -5'
28284 3' -38.2 NC_005902.1 + 15152 0.85 0.987934
Target:  5'- uUUUAACAUgUAAGCUAUAUACuuACu -3'
miRNA:   3'- gAAAUUGUGgAUUCGAUAUAUGuuUG- -5'
28284 3' -38.2 NC_005902.1 + 15425 1.05 0.31035
Target:  5'- uCUUUAACACCUAAGCUAUAUAUAAAUa -3'
miRNA:   3'- -GAAAUUGUGGAUUCGAUAUAUGUUUG- -5'
28284 3' -38.2 NC_005902.1 + 15479 0.82 0.998094
Target:  5'- -gUUAAUGCUUAAGCUAUAUACAu-- -3'
miRNA:   3'- gaAAUUGUGGAUUCGAUAUAUGUuug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.