miRNA display CGI


Results 21 - 40 of 474 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28284 3' -38.2 NC_005902.1 + 36165 1 0.503908
Target:  5'- uUUUAACAUCUAAGCUAUAUAUAAACa -3'
miRNA:   3'- gAAAUUGUGGAUUCGAUAUAUGUUUG- -5'
28284 3' -38.2 NC_005902.1 + 167157 1.02 0.399721
Target:  5'- cCUUUAACACCUAAGCUAUAUACuuAAGCg -3'
miRNA:   3'- -GAAAUUGUGGAUUCGAUAUAUG--UUUG- -5'
28284 3' -38.2 NC_005902.1 + 42241 1.04 0.335479
Target:  5'- -cUUAACACCUAAGCUAUAUACAAAUg -3'
miRNA:   3'- gaAAUUGUGGAUUCGAUAUAUGUUUG- -5'
28284 3' -38.2 NC_005902.1 + 54052 1.08 0.230545
Target:  5'- cCUUUAACACCUAAGCUAUAUAUGAACa -3'
miRNA:   3'- -GAAAUUGUGGAUUCGAUAUAUGUUUG- -5'
28284 3' -38.2 NC_005902.1 + 40969 0.97 0.606531
Target:  5'- cCUUUAAUACCUAAGCUAUAUACAcuCa -3'
miRNA:   3'- -GAAAUUGUGGAUUCGAUAUAUGUuuG- -5'
28284 3' -38.2 NC_005902.1 + 28979 0.98 0.560249
Target:  5'- -gUUAACACCUAAGCUAUAcACAAACg -3'
miRNA:   3'- gaAAUUGUGGAUUCGAUAUaUGUUUG- -5'
28284 3' -38.2 NC_005902.1 + 170702 1.03 0.390074
Target:  5'- uCUUUAACACCUAAGCUAUAUAUGAAUa -3'
miRNA:   3'- -GAAAUUGUGGAUUCGAUAUAUGUUUG- -5'
28284 3' -38.2 NC_005902.1 + 91859 1.1 0.173705
Target:  5'- cCUUUAACACCUAAGCUAUAUACAAAUa -3'
miRNA:   3'- -GAAAUUGUGGAUUCGAUAUAUGUUUG- -5'
28284 3' -38.2 NC_005902.1 + 170850 0.99 0.548816
Target:  5'- cCUUUAACAUgUAAGCUAUAUACAAACu -3'
miRNA:   3'- -GAAAUUGUGgAUUCGAUAUAUGUUUG- -5'
28284 3' -38.2 NC_005902.1 + 80736 1.15 0.108481
Target:  5'- uCUUUAACACCUAAGCUAUAUACAAACa -3'
miRNA:   3'- -GAAAUUGUGGAUUCGAUAUAUGUUUG- -5'
28284 3' -38.2 NC_005902.1 + 78212 1.02 0.399721
Target:  5'- uCUUUAACAUCUAAGCUAUAUACGAAUa -3'
miRNA:   3'- -GAAAUUGUGGAUUCGAUAUAUGUUUG- -5'
28284 3' -38.2 NC_005902.1 + 45081 1 0.503908
Target:  5'- uUUUAACACCUAAGCUAUAUACuuACu -3'
miRNA:   3'- gAAAUUGUGGAUUCGAUAUAUGuuUG- -5'
28284 3' -38.2 NC_005902.1 + 174596 1.04 0.35304
Target:  5'- -gUUAACACCUAAGCUAUAUACGAAUg -3'
miRNA:   3'- gaAAUUGUGGAUUCGAUAUAUGUUUG- -5'
28284 3' -38.2 NC_005902.1 + 46938 1.04 0.335479
Target:  5'- -gUUAAUACCUAAGCUAUAUGCAAGCa -3'
miRNA:   3'- gaAAUUGUGGAUUCGAUAUAUGUUUG- -5'
28284 3' -38.2 NC_005902.1 + 47237 1.05 0.318564
Target:  5'- cCUUUAACACCUAAGCUAUAUACAcACu -3'
miRNA:   3'- -GAAAUUGUGGAUUCGAUAUAUGUuUG- -5'
28284 3' -38.2 NC_005902.1 + 105945 1.07 0.257363
Target:  5'- uUUUAACACCUAAGCUAUAUACAAAUa -3'
miRNA:   3'- gAAAUUGUGGAUUCGAUAUAUGUUUG- -5'
28284 3' -38.2 NC_005902.1 + 157852 0.97 0.629862
Target:  5'- aUUUAACACCUAAGCUAUAUAUuuGCu -3'
miRNA:   3'- gAAAUUGUGGAUUCGAUAUAUGuuUG- -5'
28284 3' -38.2 NC_005902.1 + 48112 0.97 0.618189
Target:  5'- cCUUUAACAUUUAAGCUAUAUACAAAUg -3'
miRNA:   3'- -GAAAUUGUGGAUUCGAUAUAUGUUUG- -5'
28284 3' -38.2 NC_005902.1 + 128774 0.98 0.583298
Target:  5'- cCUUUAACACCUAAGCUAUAUACu--- -3'
miRNA:   3'- -GAAAUUGUGGAUUCGAUAUAUGuuug -5'
28284 3' -38.2 NC_005902.1 + 1203 0.98 0.571746
Target:  5'- -gUUAACACCUAAGUUAUAUACAAAUa -3'
miRNA:   3'- gaAAUUGUGGAUUCGAUAUAUGUUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.