miRNA display CGI


Results 21 - 40 of 474 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28284 3' -38.2 NC_005902.1 + 69246 0.67 1
Target:  5'- aUUUAAUuCCUAAGUcuUAUACAAGu -3'
miRNA:   3'- gAAAUUGuGGAUUCGauAUAUGUUUg -5'
28284 3' -38.2 NC_005902.1 + 166452 0.67 1
Target:  5'- uCUUUAACGCauaAGGCU-UAUAUAAAUa -3'
miRNA:   3'- -GAAAUUGUGga-UUCGAuAUAUGUUUG- -5'
28284 3' -38.2 NC_005902.1 + 71754 0.68 1
Target:  5'- uUUUAACACCUAcaCUAcAUACuuGCu -3'
miRNA:   3'- gAAAUUGUGGAUucGAUaUAUGuuUG- -5'
28284 3' -38.2 NC_005902.1 + 137498 0.68 1
Target:  5'- cCUUUAAUACCUAAau--UAUAUGAACa -3'
miRNA:   3'- -GAAAUUGUGGAUUcgauAUAUGUUUG- -5'
28284 3' -38.2 NC_005902.1 + 135991 0.68 1
Target:  5'- uUUUAACACCUAAG-UAUAUuCAcuCa -3'
miRNA:   3'- gAAAUUGUGGAUUCgAUAUAuGUuuG- -5'
28284 3' -38.2 NC_005902.1 + 76251 0.68 1
Target:  5'- cCUUcAAUAUCUAAGCUAUAuUAUuuACu -3'
miRNA:   3'- -GAAaUUGUGGAUUCGAUAU-AUGuuUG- -5'
28284 3' -38.2 NC_005902.1 + 48631 0.69 1
Target:  5'- uUUUAACccuuuACCUAAG-UAUAUACAAAa -3'
miRNA:   3'- gAAAUUG-----UGGAUUCgAUAUAUGUUUg -5'
28284 3' -38.2 NC_005902.1 + 167438 0.69 1
Target:  5'- uUUUAACuCCUAAGUUAUAUAa---- -3'
miRNA:   3'- gAAAUUGuGGAUUCGAUAUAUguuug -5'
28284 3' -38.2 NC_005902.1 + 63728 0.69 1
Target:  5'- gUUUAACcUCUAGGUUAUAUACccACu -3'
miRNA:   3'- gAAAUUGuGGAUUCGAUAUAUGuuUG- -5'
28284 3' -38.2 NC_005902.1 + 166365 0.69 1
Target:  5'- -cUUAAUAUCUAAGCUAcAUGaauGAGCa -3'
miRNA:   3'- gaAAUUGUGGAUUCGAUaUAUg--UUUG- -5'
28284 3' -38.2 NC_005902.1 + 114404 0.69 1
Target:  5'- ---aAAgGgUUAAGCUAUAUACAGAg -3'
miRNA:   3'- gaaaUUgUgGAUUCGAUAUAUGUUUg -5'
28284 3' -38.2 NC_005902.1 + 101811 0.69 1
Target:  5'- ---aAAC-CCgaugguccAGCUAUAUGCAAACa -3'
miRNA:   3'- gaaaUUGuGGau------UCGAUAUAUGUUUG- -5'
28284 3' -38.2 NC_005902.1 + 105139 0.69 1
Target:  5'- -cUUAACcCUUAAGUUAUAUACucACu -3'
miRNA:   3'- gaAAUUGuGGAUUCGAUAUAUGuuUG- -5'
28284 3' -38.2 NC_005902.1 + 127443 0.69 1
Target:  5'- uUUUAACauuuuaaACUUAAGCUAUAaGCAAAg -3'
miRNA:   3'- gAAAUUG-------UGGAUUCGAUAUaUGUUUg -5'
28284 3' -38.2 NC_005902.1 + 104325 0.69 1
Target:  5'- cCUUUAACAUCUAAGCcaugaguaaGUAUAUAGc- -3'
miRNA:   3'- -GAAAUUGUGGAUUCGa--------UAUAUGUUug -5'
28284 3' -38.2 NC_005902.1 + 11252 0.69 1
Target:  5'- -gUUAAUA-CUAAGCUAUAUACuuAUu -3'
miRNA:   3'- gaAAUUGUgGAUUCGAUAUAUGuuUG- -5'
28284 3' -38.2 NC_005902.1 + 61470 0.69 1
Target:  5'- uCUUUAACACUaAA-UUAUAUAUAAGCa -3'
miRNA:   3'- -GAAAUUGUGGaUUcGAUAUAUGUUUG- -5'
28284 3' -38.2 NC_005902.1 + 8112 0.69 1
Target:  5'- uUUUAAUAUaUAAGCUAUAUACu--- -3'
miRNA:   3'- gAAAUUGUGgAUUCGAUAUAUGuuug -5'
28284 3' -38.2 NC_005902.1 + 127705 0.69 1
Target:  5'- --cUAACAUCUAAGCaAUAUAaaguaaAAACa -3'
miRNA:   3'- gaaAUUGUGGAUUCGaUAUAUg-----UUUG- -5'
28284 3' -38.2 NC_005902.1 + 122769 0.69 1
Target:  5'- cCUUUAACcUUUAAGCUAUAUgaACAuAGCg -3'
miRNA:   3'- -GAAAUUGuGGAUUCGAUAUA--UGU-UUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.