Results 1 - 20 of 474 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28284 | 3' | -38.2 | NC_005902.1 | + | 77321 | 0.66 | 1 |
Target: 5'- aUUUAACACCUAAauuuaCUAUuccUACAGAa -3' miRNA: 3'- gAAAUUGUGGAUUc----GAUAu--AUGUUUg -5' |
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28284 | 3' | -38.2 | NC_005902.1 | + | 24958 | 0.66 | 1 |
Target: 5'- uCUUUAAUACCcGAGUcAUAUACu--- -3' miRNA: 3'- -GAAAUUGUGGaUUCGaUAUAUGuuug -5' |
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28284 | 3' | -38.2 | NC_005902.1 | + | 23416 | 0.66 | 1 |
Target: 5'- --cUAACACauucAAGCUAUAUACu--- -3' miRNA: 3'- gaaAUUGUGga--UUCGAUAUAUGuuug -5' |
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28284 | 3' | -38.2 | NC_005902.1 | + | 161703 | 0.66 | 1 |
Target: 5'- uCUUcAACACUUGA--UAUAUACAAAUg -3' miRNA: 3'- -GAAaUUGUGGAUUcgAUAUAUGUUUG- -5' |
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28284 | 3' | -38.2 | NC_005902.1 | + | 32868 | 0.66 | 1 |
Target: 5'- uUUUAAUACCUAAaGCU-UAUACuAAUu -3' miRNA: 3'- gAAAUUGUGGAUU-CGAuAUAUGuUUG- -5' |
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28284 | 3' | -38.2 | NC_005902.1 | + | 87065 | 0.66 | 1 |
Target: 5'- uUUUAAUcCUUAAGUUAUAUAUuuACu -3' miRNA: 3'- gAAAUUGuGGAUUCGAUAUAUGuuUG- -5' |
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28284 | 3' | -38.2 | NC_005902.1 | + | 58534 | 0.66 | 1 |
Target: 5'- --aUAACGCCUuggGAGUUAaacUGUACuuACu -3' miRNA: 3'- gaaAUUGUGGA---UUCGAU---AUAUGuuUG- -5' |
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28284 | 3' | -38.2 | NC_005902.1 | + | 8073 | 0.66 | 1 |
Target: 5'- uUUUAACACCUGAuaUA-AUACcuGCa -3' miRNA: 3'- gAAAUUGUGGAUUcgAUaUAUGuuUG- -5' |
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28284 | 3' | -38.2 | NC_005902.1 | + | 3256 | 0.66 | 1 |
Target: 5'- uUUUAACAUCUAAaCUA--UACAAAUg -3' miRNA: 3'- gAAAUUGUGGAUUcGAUauAUGUUUG- -5' |
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28284 | 3' | -38.2 | NC_005902.1 | + | 136413 | 0.67 | 1 |
Target: 5'- cCUUUAACcCCUAAgGCUuAUAUAagUAAACa -3' miRNA: 3'- -GAAAUUGuGGAUU-CGA-UAUAU--GUUUG- -5' |
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28284 | 3' | -38.2 | NC_005902.1 | + | 28792 | 0.67 | 1 |
Target: 5'- cCUUUAACAUCUGuGCUcuuuuGUAUAUAGc- -3' miRNA: 3'- -GAAAUUGUGGAUuCGA-----UAUAUGUUug -5' |
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28284 | 3' | -38.2 | NC_005902.1 | + | 163449 | 0.67 | 1 |
Target: 5'- cCUUUAAauCCUAAgGCUAUAUaaguaaguauaGCAAACa -3' miRNA: 3'- -GAAAUUguGGAUU-CGAUAUA-----------UGUUUG- -5' |
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28284 | 3' | -38.2 | NC_005902.1 | + | 37201 | 0.67 | 1 |
Target: 5'- uUUUAAUACauauuUAAGCUAUAUAUucACu -3' miRNA: 3'- gAAAUUGUGg----AUUCGAUAUAUGuuUG- -5' |
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28284 | 3' | -38.2 | NC_005902.1 | + | 162718 | 0.67 | 1 |
Target: 5'- aUUUAccuuAUACCUAAGCUAcAUAUucACu -3' miRNA: 3'- gAAAU----UGUGGAUUCGAUaUAUGuuUG- -5' |
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28284 | 3' | -38.2 | NC_005902.1 | + | 110865 | 0.67 | 1 |
Target: 5'- uUUUAACucuuuACCUAAGUUAUAUaGCAu-- -3' miRNA: 3'- gAAAUUG-----UGGAUUCGAUAUA-UGUuug -5' |
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28284 | 3' | -38.2 | NC_005902.1 | + | 106000 | 0.67 | 1 |
Target: 5'- uCUUUAACuCCUAAGUUGUucuCAAu- -3' miRNA: 3'- -GAAAUUGuGGAUUCGAUAuauGUUug -5' |
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28284 | 3' | -38.2 | NC_005902.1 | + | 166452 | 0.67 | 1 |
Target: 5'- uCUUUAACGCauaAGGCU-UAUAUAAAUa -3' miRNA: 3'- -GAAAUUGUGga-UUCGAuAUAUGUUUG- -5' |
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28284 | 3' | -38.2 | NC_005902.1 | + | 112398 | 0.67 | 1 |
Target: 5'- uUUUAACACaUAAGC-AUAUACucACu -3' miRNA: 3'- gAAAUUGUGgAUUCGaUAUAUGuuUG- -5' |
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28284 | 3' | -38.2 | NC_005902.1 | + | 69246 | 0.67 | 1 |
Target: 5'- aUUUAAUuCCUAAGUcuUAUACAAGu -3' miRNA: 3'- gAAAUUGuGGAUUCGauAUAUGUUUg -5' |
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28284 | 3' | -38.2 | NC_005902.1 | + | 47427 | 0.67 | 1 |
Target: 5'- ---aAAgGgUUAAGCUAUAUGCAAGu -3' miRNA: 3'- gaaaUUgUgGAUUCGAUAUAUGUUUg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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