miRNA display CGI


Results 1 - 20 of 474 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28284 3' -38.2 NC_005902.1 + 146735 1.15 0.102162
Target:  5'- cCUUUAACACCUAAGCUAUAUACAAACa -3'
miRNA:   3'- -GAAAUUGUGGAUUCGAUAUAUGUUUG- -5'
28284 3' -38.2 NC_005902.1 + 39098 1.15 0.108481
Target:  5'- uCUUUAACACCUAAGCUAUAUACAAACa -3'
miRNA:   3'- -GAAAUUGUGGAUUCGAUAUAUGUUUG- -5'
28284 3' -38.2 NC_005902.1 + 80736 1.15 0.108481
Target:  5'- uCUUUAACACCUAAGCUAUAUACAAACa -3'
miRNA:   3'- -GAAAUUGUGGAUUCGAUAUAUGUUUG- -5'
28284 3' -38.2 NC_005902.1 + 156433 1.12 0.154693
Target:  5'- uUUUAACACCUAAGCUAUAUACAAACa -3'
miRNA:   3'- gAAAUUGUGGAUUCGAUAUAUGUUUG- -5'
28284 3' -38.2 NC_005902.1 + 91859 1.1 0.173705
Target:  5'- cCUUUAACACCUAAGCUAUAUACAAAUa -3'
miRNA:   3'- -GAAAUUGUGGAUUCGAUAUAUGUUUG- -5'
28284 3' -38.2 NC_005902.1 + 60468 1.1 0.178773
Target:  5'- cCUUUAACACCUAAGCUAUAUAUAAACa -3'
miRNA:   3'- -GAAAUUGUGGAUUCGAUAUAUGUUUG- -5'
28284 3' -38.2 NC_005902.1 + 31418 1.1 0.178773
Target:  5'- cCUUUAAUACCUAAGCUAUAUACAAACa -3'
miRNA:   3'- -GAAAUUGUGGAUUCGAUAUAUGUUUG- -5'
28284 3' -38.2 NC_005902.1 + 75904 1.1 0.178773
Target:  5'- cCUUUAAUACCUAAGCUAUAUACAAGCa -3'
miRNA:   3'- -GAAAUUGUGGAUUCGAUAUAUGUUUG- -5'
28284 3' -38.2 NC_005902.1 + 133676 1.1 0.183973
Target:  5'- uCUUUAACACCUAAGCUAUAUACAAAUa -3'
miRNA:   3'- -GAAAUUGUGGAUUCGAUAUAUGUUUG- -5'
28284 3' -38.2 NC_005902.1 + 165889 1.1 0.189305
Target:  5'- cCUUUAACACCUAAGCUAUAUACGAAUa -3'
miRNA:   3'- -GAAAUUGUGGAUUCGAUAUAUGUUUG- -5'
28284 3' -38.2 NC_005902.1 + 88566 1.09 0.206124
Target:  5'- cCUUUAACACCUAAGUUAUAUACAAACa -3'
miRNA:   3'- -GAAAUUGUGGAUUCGAUAUAUGUUUG- -5'
28284 3' -38.2 NC_005902.1 + 155214 1.08 0.218042
Target:  5'- cCUUUAACAUCUAAGCUAUAUACAAACa -3'
miRNA:   3'- -GAAAUUGUGGAUUCGAUAUAUGUUUG- -5'
28284 3' -38.2 NC_005902.1 + 54052 1.08 0.230545
Target:  5'- cCUUUAACACCUAAGCUAUAUAUGAACa -3'
miRNA:   3'- -GAAAUUGUGGAUUCGAUAUAUGUUUG- -5'
28284 3' -38.2 NC_005902.1 + 122644 1.08 0.230545
Target:  5'- uCUUUAACAUCUAAGCUAUAUACAAACa -3'
miRNA:   3'- -GAAAUUGUGGAUUCGAUAUAUGUUUG- -5'
28284 3' -38.2 NC_005902.1 + 157230 1.08 0.23702
Target:  5'- cCUUUAACACCUAAGCUAUAUACAAAa -3'
miRNA:   3'- -GAAAUUGUGGAUUCGAUAUAUGUUUg -5'
28284 3' -38.2 NC_005902.1 + 29214 1.07 0.243647
Target:  5'- uCUUUAACACCUAAGCUAUAUAUGAACa -3'
miRNA:   3'- -GAAAUUGUGGAUUCGAUAUAUGUUUG- -5'
28284 3' -38.2 NC_005902.1 + 105945 1.07 0.257363
Target:  5'- uUUUAACACCUAAGCUAUAUACAAAUa -3'
miRNA:   3'- gAAAUUGUGGAUUCGAUAUAUGUUUG- -5'
28284 3' -38.2 NC_005902.1 + 182566 1.07 0.257363
Target:  5'- uUUUAACACCUAAGCUAUAUACAAAUg -3'
miRNA:   3'- gAAAUUGUGGAUUCGAUAUAUGUUUG- -5'
28284 3' -38.2 NC_005902.1 + 93841 1.07 0.257363
Target:  5'- aUUUAAUACCUAAGCUAUAUACAAACa -3'
miRNA:   3'- gAAAUUGUGGAUUCGAUAUAUGUUUG- -5'
28284 3' -38.2 NC_005902.1 + 140924 1.06 0.271703
Target:  5'- --aUAACACCUAAGCUAUAUACGAACa -3'
miRNA:   3'- gaaAUUGUGGAUUCGAUAUAUGUUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.