miRNA display CGI


Results 1 - 20 of 474 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28284 3' -38.2 NC_005902.1 + 39098 1.15 0.108481
Target:  5'- uCUUUAACACCUAAGCUAUAUACAAACa -3'
miRNA:   3'- -GAAAUUGUGGAUUCGAUAUAUGUUUG- -5'
28284 3' -38.2 NC_005902.1 + 170702 1.03 0.390074
Target:  5'- uCUUUAACACCUAAGCUAUAUAUGAAUa -3'
miRNA:   3'- -GAAAUUGUGGAUUCGAUAUAUGUUUG- -5'
28284 3' -38.2 NC_005902.1 + 167157 1.02 0.399721
Target:  5'- cCUUUAACACCUAAGCUAUAUACuuAAGCg -3'
miRNA:   3'- -GAAAUUGUGGAUUCGAUAUAUG--UUUG- -5'
28284 3' -38.2 NC_005902.1 + 32868 0.66 1
Target:  5'- uUUUAAUACCUAAaGCU-UAUACuAAUu -3'
miRNA:   3'- gAAAUUGUGGAUU-CGAuAUAUGuUUG- -5'
28284 3' -38.2 NC_005902.1 + 105945 1.07 0.257363
Target:  5'- uUUUAACACCUAAGCUAUAUACAAAUa -3'
miRNA:   3'- gAAAUUGUGGAUUCGAUAUAUGUUUG- -5'
28284 3' -38.2 NC_005902.1 + 1147 1.05 0.31035
Target:  5'- cCUUUAAgACCUAAGCUGUAUACAAACa -3'
miRNA:   3'- -GAAAUUgUGGAUUCGAUAUAUGUUUG- -5'
28284 3' -38.2 NC_005902.1 + 47237 1.05 0.318564
Target:  5'- cCUUUAACACCUAAGCUAUAUACAcACu -3'
miRNA:   3'- -GAAAUUGUGGAUUCGAUAUAUGUuUG- -5'
28284 3' -38.2 NC_005902.1 + 88298 1.05 0.318564
Target:  5'- -aUUAACACCUAAGCUAUAUGCAAAUa -3'
miRNA:   3'- gaAAUUGUGGAUUCGAUAUAUGUUUG- -5'
28284 3' -38.2 NC_005902.1 + 46938 1.04 0.335479
Target:  5'- -gUUAAUACCUAAGCUAUAUGCAAGCa -3'
miRNA:   3'- gaAAUUGUGGAUUCGAUAUAUGUUUG- -5'
28284 3' -38.2 NC_005902.1 + 116634 1.03 0.390074
Target:  5'- uUUUAACACCUAAGCUAUAUACAAGu -3'
miRNA:   3'- gAAAUUGUGGAUUCGAUAUAUGUUUg -5'
28284 3' -38.2 NC_005902.1 + 85342 1.04 0.35304
Target:  5'- cCUUUAACAUCUAAGCUAUAUACAAAUa -3'
miRNA:   3'- -GAAAUUGUGGAUUCGAUAUAUGUUUG- -5'
28284 3' -38.2 NC_005902.1 + 42241 1.04 0.335479
Target:  5'- -cUUAACACCUAAGCUAUAUACAAAUg -3'
miRNA:   3'- gaAAUUGUGGAUUCGAUAUAUGUUUG- -5'
28284 3' -38.2 NC_005902.1 + 80736 1.15 0.108481
Target:  5'- uCUUUAACACCUAAGCUAUAUACAAACa -3'
miRNA:   3'- -GAAAUUGUGGAUUCGAUAUAUGUUUG- -5'
28284 3' -38.2 NC_005902.1 + 174596 1.04 0.35304
Target:  5'- -gUUAACACCUAAGCUAUAUACGAAUg -3'
miRNA:   3'- gaAAUUGUGGAUUCGAUAUAUGUUUG- -5'
28284 3' -38.2 NC_005902.1 + 91859 1.1 0.173705
Target:  5'- cCUUUAACACCUAAGCUAUAUACAAAUa -3'
miRNA:   3'- -GAAAUUGUGGAUUCGAUAUAUGUUUG- -5'
28284 3' -38.2 NC_005902.1 + 68936 1.04 0.32694
Target:  5'- uUUUAACACUUAAGCUAUAUACAAACa -3'
miRNA:   3'- gAAAUUGUGGAUUCGAUAUAUGUUUG- -5'
28284 3' -38.2 NC_005902.1 + 97177 1.03 0.371242
Target:  5'- cCUUUAACACCUAAGCUAUAUAUGAAUg -3'
miRNA:   3'- -GAAAUUGUGGAUUCGAUAUAUGUUUG- -5'
28284 3' -38.2 NC_005902.1 + 78212 1.02 0.399721
Target:  5'- uCUUUAACAUCUAAGCUAUAUACGAAUa -3'
miRNA:   3'- -GAAAUUGUGGAUUCGAUAUAUGUUUG- -5'
28284 3' -38.2 NC_005902.1 + 54052 1.08 0.230545
Target:  5'- cCUUUAACACCUAAGCUAUAUAUGAACa -3'
miRNA:   3'- -GAAAUUGUGGAUUCGAUAUAUGUUUG- -5'
28284 3' -38.2 NC_005902.1 + 109918 1.05 0.31035
Target:  5'- cCUUUAAgACCUAAGCUAUAUGCAAACa -3'
miRNA:   3'- -GAAAUUgUGGAUUCGAUAUAUGUUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.