Results 21 - 40 of 474 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28284 | 3' | -38.2 | NC_005902.1 | + | 86392 | 1.06 | 0.286679 |
Target: 5'- uCUUUAACACCUAAGCUAUAUACAAGu -3' miRNA: 3'- -GAAAUUGUGGAUUCGAUAUAUGUUUg -5' |
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28284 | 3' | -38.2 | NC_005902.1 | + | 1147 | 1.05 | 0.31035 |
Target: 5'- cCUUUAAgACCUAAGCUGUAUACAAACa -3' miRNA: 3'- -GAAAUUgUGGAUUCGAUAUAUGUUUG- -5' |
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28284 | 3' | -38.2 | NC_005902.1 | + | 109918 | 1.05 | 0.31035 |
Target: 5'- cCUUUAAgACCUAAGCUAUAUGCAAACa -3' miRNA: 3'- -GAAAUUgUGGAUUCGAUAUAUGUUUG- -5' |
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28284 | 3' | -38.2 | NC_005902.1 | + | 15425 | 1.05 | 0.31035 |
Target: 5'- uCUUUAACACCUAAGCUAUAUAUAAAUa -3' miRNA: 3'- -GAAAUUGUGGAUUCGAUAUAUGUUUG- -5' |
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28284 | 3' | -38.2 | NC_005902.1 | + | 88298 | 1.05 | 0.318564 |
Target: 5'- -aUUAACACCUAAGCUAUAUGCAAAUa -3' miRNA: 3'- gaAAUUGUGGAUUCGAUAUAUGUUUG- -5' |
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28284 | 3' | -38.2 | NC_005902.1 | + | 47237 | 1.05 | 0.318564 |
Target: 5'- cCUUUAACACCUAAGCUAUAUACAcACu -3' miRNA: 3'- -GAAAUUGUGGAUUCGAUAUAUGUuUG- -5' |
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28284 | 3' | -38.2 | NC_005902.1 | + | 68936 | 1.04 | 0.32694 |
Target: 5'- uUUUAACACUUAAGCUAUAUACAAACa -3' miRNA: 3'- gAAAUUGUGGAUUCGAUAUAUGUUUG- -5' |
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28284 | 3' | -38.2 | NC_005902.1 | + | 46938 | 1.04 | 0.335479 |
Target: 5'- -gUUAAUACCUAAGCUAUAUGCAAGCa -3' miRNA: 3'- gaAAUUGUGGAUUCGAUAUAUGUUUG- -5' |
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28284 | 3' | -38.2 | NC_005902.1 | + | 42241 | 1.04 | 0.335479 |
Target: 5'- -cUUAACACCUAAGCUAUAUACAAAUg -3' miRNA: 3'- gaAAUUGUGGAUUCGAUAUAUGUUUG- -5' |
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28284 | 3' | -38.2 | NC_005902.1 | + | 182935 | 1.04 | 0.335479 |
Target: 5'- uUUUAACACCUAAGCUAUAUAUGAACa -3' miRNA: 3'- gAAAUUGUGGAUUCGAUAUAUGUUUG- -5' |
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28284 | 3' | -38.2 | NC_005902.1 | + | 174596 | 1.04 | 0.35304 |
Target: 5'- -gUUAACACCUAAGCUAUAUACGAAUg -3' miRNA: 3'- gaAAUUGUGGAUUCGAUAUAUGUUUG- -5' |
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28284 | 3' | -38.2 | NC_005902.1 | + | 85342 | 1.04 | 0.35304 |
Target: 5'- cCUUUAACAUCUAAGCUAUAUACAAAUa -3' miRNA: 3'- -GAAAUUGUGGAUUCGAUAUAUGUUUG- -5' |
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28284 | 3' | -38.2 | NC_005902.1 | + | 61622 | 1.04 | 0.35304 |
Target: 5'- cCUUUAACAUCUAAGCUAUAUACAAAUg -3' miRNA: 3'- -GAAAUUGUGGAUUCGAUAUAUGUUUG- -5' |
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28284 | 3' | -38.2 | NC_005902.1 | + | 137753 | 1.03 | 0.371242 |
Target: 5'- cCUUUAACACUUAAGCUAUAUAUAAACa -3' miRNA: 3'- -GAAAUUGUGGAUUCGAUAUAUGUUUG- -5' |
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28284 | 3' | -38.2 | NC_005902.1 | + | 97177 | 1.03 | 0.371242 |
Target: 5'- cCUUUAACACCUAAGCUAUAUAUGAAUg -3' miRNA: 3'- -GAAAUUGUGGAUUCGAUAUAUGUUUG- -5' |
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28284 | 3' | -38.2 | NC_005902.1 | + | 109360 | 1.03 | 0.371242 |
Target: 5'- cCUUUAACACUUAAGCUAUAUAUAAGCa -3' miRNA: 3'- -GAAAUUGUGGAUUCGAUAUAUGUUUG- -5' |
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28284 | 3' | -38.2 | NC_005902.1 | + | 44017 | 1.03 | 0.371242 |
Target: 5'- uUUUAACACCUAAGCUAUAUACAcGCa -3' miRNA: 3'- gAAAUUGUGGAUUCGAUAUAUGUuUG- -5' |
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28284 | 3' | -38.2 | NC_005902.1 | + | 86444 | 1.03 | 0.38058 |
Target: 5'- uCUUUAACACUUAAGCUAUAUACAAAUa -3' miRNA: 3'- -GAAAUUGUGGAUUCGAUAUAUGUUUG- -5' |
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28284 | 3' | -38.2 | NC_005902.1 | + | 49954 | 1.03 | 0.38058 |
Target: 5'- cCUUUAACuCCUAAGCUAUAUACAAACa -3' miRNA: 3'- -GAAAUUGuGGAUUCGAUAUAUGUUUG- -5' |
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28284 | 3' | -38.2 | NC_005902.1 | + | 158230 | 1.03 | 0.38058 |
Target: 5'- cCUUUAAUGCCUAAGCUAUAUACAAAUg -3' miRNA: 3'- -GAAAUUGUGGAUUCGAUAUAUGUUUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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