miRNA display CGI


Results 1 - 20 of 474 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28284 3' -38.2 NC_005902.1 + 184863 1.01 0.471297
Target:  5'- cCUUUAACACCUAAGCUGUAUAUAuGCu -3'
miRNA:   3'- -GAAAUUGUGGAUUCGAUAUAUGUuUG- -5'
28284 3' -38.2 NC_005902.1 + 184752 0.89 0.923875
Target:  5'- --cUAACACCUGAGCUAUAUAUAcuCa -3'
miRNA:   3'- gaaAUUGUGGAUUCGAUAUAUGUuuG- -5'
28284 3' -38.2 NC_005902.1 + 184591 0.94 0.755646
Target:  5'- gCUUUAACACUUAAGCUAUAUACucACu -3'
miRNA:   3'- -GAAAUUGUGGAUUCGAUAUAUGuuUG- -5'
28284 3' -38.2 NC_005902.1 + 184376 0.7 1
Target:  5'- uUUUAACACCc--GUUAUAUAUAGAa -3'
miRNA:   3'- gAAAUUGUGGauuCGAUAUAUGUUUg -5'
28284 3' -38.2 NC_005902.1 + 182935 1.04 0.335479
Target:  5'- uUUUAACACCUAAGCUAUAUAUGAACa -3'
miRNA:   3'- gAAAUUGUGGAUUCGAUAUAUGUUUG- -5'
28284 3' -38.2 NC_005902.1 + 182566 1.07 0.257363
Target:  5'- uUUUAACACCUAAGCUAUAUACAAAUg -3'
miRNA:   3'- gAAAUUGUGGAUUCGAUAUAUGUUUG- -5'
28284 3' -38.2 NC_005902.1 + 181392 0.73 1
Target:  5'- gCUUUAAUcCCUAAGUUAUAUAaacuAGCa -3'
miRNA:   3'- -GAAAUUGuGGAUUCGAUAUAUgu--UUG- -5'
28284 3' -38.2 NC_005902.1 + 181228 0.86 0.979569
Target:  5'- cCUUUAACuCCUAAGUUAUAUACuuGCu -3'
miRNA:   3'- -GAAAUUGuGGAUUCGAUAUAUGuuUG- -5'
28284 3' -38.2 NC_005902.1 + 180885 0.79 0.99974
Target:  5'- cCUUUAACAUCUAAGCaAUAUcacaagugagcauaACAAGCa -3'
miRNA:   3'- -GAAAUUGUGGAUUCGaUAUA--------------UGUUUG- -5'
28284 3' -38.2 NC_005902.1 + 180829 0.81 0.998981
Target:  5'- --cUAACACCUAAGCgAUAUACucACu -3'
miRNA:   3'- gaaAUUGUGGAUUCGaUAUAUGuuUG- -5'
28284 3' -38.2 NC_005902.1 + 180622 0.94 0.755646
Target:  5'- uCUUUAACACCUAAGCUuAUAUgaACAAGCa -3'
miRNA:   3'- -GAAAUUGUGGAUUCGA-UAUA--UGUUUG- -5'
28284 3' -38.2 NC_005902.1 + 180352 0.98 0.594897
Target:  5'- uCUUUAACcCCUAAGCUAUAUACAAAUa -3'
miRNA:   3'- -GAAAUUGuGGAUUCGAUAUAUGUUUG- -5'
28284 3' -38.2 NC_005902.1 + 179758 0.83 0.995223
Target:  5'- -gUUAAUACUgAAGCUAUAUACAAAUg -3'
miRNA:   3'- gaAAUUGUGGaUUCGAUAUAUGUUUG- -5'
28284 3' -38.2 NC_005902.1 + 179697 0.82 0.998094
Target:  5'- cCUUUAAaACCUAAGCUAUAUAUAcuCa -3'
miRNA:   3'- -GAAAUUgUGGAUUCGAUAUAUGUuuG- -5'
28284 3' -38.2 NC_005902.1 + 178371 0.92 0.846648
Target:  5'- -----cUACCUAAGCUAUAUACAAGCa -3'
miRNA:   3'- gaaauuGUGGAUUCGAUAUAUGUUUG- -5'
28284 3' -38.2 NC_005902.1 + 177828 0.87 0.955649
Target:  5'- -aUUAACuuuGCCUAAGCUAUAUACAAGu -3'
miRNA:   3'- gaAAUUG---UGGAUUCGAUAUAUGUUUg -5'
28284 3' -38.2 NC_005902.1 + 177327 0.81 0.999184
Target:  5'- cCUUUAACACCUAAGUUuauuUGUAUAuAGCa -3'
miRNA:   3'- -GAAAUUGUGGAUUCGAu---AUAUGU-UUG- -5'
28284 3' -38.2 NC_005902.1 + 175879 0.82 0.996635
Target:  5'- uUUUAAUuuuauuauugACCUGAGCUAUAUACAAGu -3'
miRNA:   3'- gAAAUUG----------UGGAUUCGAUAUAUGUUUg -5'
28284 3' -38.2 NC_005902.1 + 175614 0.88 0.951115
Target:  5'- cCUUUAAUACgUAAGCcGUAUACAAACa -3'
miRNA:   3'- -GAAAUUGUGgAUUCGaUAUAUGUUUG- -5'
28284 3' -38.2 NC_005902.1 + 175208 0.78 0.999943
Target:  5'- -gUUAACACUUAAGUUAUAUAUGAu- -3'
miRNA:   3'- gaAAUUGUGGAUUCGAUAUAUGUUug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.