miRNA display CGI


Results 1 - 20 of 117 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28284 5' -45.8 NC_005902.1 + 137783 0.66 0.999988
Target:  5'- -uGUGuaUAUAUAGCUUAaGUGUUAAa -3'
miRNA:   3'- cuCACccAUAUAUCGAAUcCACAAUU- -5'
28284 5' -45.8 NC_005902.1 + 136084 0.66 0.999988
Target:  5'- -uGUuuGUAUAUAGCUUAGGaGUUAAa -3'
miRNA:   3'- cuCAccCAUAUAUCGAAUCCaCAAUU- -5'
28284 5' -45.8 NC_005902.1 + 184631 0.66 0.999988
Target:  5'- -----cGUAUAUAGCUUAGGgGUUAAa -3'
miRNA:   3'- cucaccCAUAUAUCGAAUCCaCAAUU- -5'
28284 5' -45.8 NC_005902.1 + 16581 0.66 0.999988
Target:  5'- uGGUGGGUgucgcaaacaaAUAUacAGCUUAaGUGUUAAa -3'
miRNA:   3'- cUCACCCA-----------UAUA--UCGAAUcCACAAUU- -5'
28284 5' -45.8 NC_005902.1 + 36839 0.66 0.999983
Target:  5'- --aUGaGUAUAUAGCUUAGGUaUUAAa -3'
miRNA:   3'- cucACcCAUAUAUCGAAUCCAcAAUU- -5'
28284 5' -45.8 NC_005902.1 + 100419 0.66 0.999983
Target:  5'- cGAGUcaGUAUAUAGCUUaAGG-GUUAAa -3'
miRNA:   3'- -CUCAccCAUAUAUCGAA-UCCaCAAUU- -5'
28284 5' -45.8 NC_005902.1 + 1289 0.66 0.999977
Target:  5'- uGAGUa--UAUAUAGCUcAGGUGUUAGg -3'
miRNA:   3'- -CUCAcccAUAUAUCGAaUCCACAAUU- -5'
28284 5' -45.8 NC_005902.1 + 90273 0.66 0.999968
Target:  5'- aAGUGaaUAUAUAGCUUAaGUGUUAAa -3'
miRNA:   3'- cUCACccAUAUAUCGAAUcCACAAUU- -5'
28284 5' -45.8 NC_005902.1 + 112185 0.67 0.999956
Target:  5'- uGAGUGaGUAUAU-GCUUAuGUGUUAAa -3'
miRNA:   3'- -CUCACcCAUAUAuCGAAUcCACAAUU- -5'
28284 5' -45.8 NC_005902.1 + 151218 0.67 0.999941
Target:  5'- uAGUGaaugaGUAUAUAaCUUAGGUGUUAAa -3'
miRNA:   3'- cUCACc----CAUAUAUcGAAUCCACAAUU- -5'
28284 5' -45.8 NC_005902.1 + 122802 0.67 0.999941
Target:  5'- ---cGaGUAUAUAGCUUAGGgGUUAAa -3'
miRNA:   3'- cucaCcCAUAUAUCGAAUCCaCAAUU- -5'
28284 5' -45.8 NC_005902.1 + 136927 0.67 0.999895
Target:  5'- cGAGUGaGUAUAUAGUgUAGGUaUUAAa -3'
miRNA:   3'- -CUCACcCAUAUAUCGaAUCCAcAAUU- -5'
28284 5' -45.8 NC_005902.1 + 110894 0.67 0.999862
Target:  5'- -uGUGGGUAUAUAGCUUAa------- -3'
miRNA:   3'- cuCACCCAUAUAUCGAAUccacaauu -5'
28284 5' -45.8 NC_005902.1 + 182661 0.68 0.999821
Target:  5'- --uUGuaUGUAUAGCUUAGGUGUa-- -3'
miRNA:   3'- cucACccAUAUAUCGAAUCCACAauu -5'
28284 5' -45.8 NC_005902.1 + 97749 0.68 0.999821
Target:  5'- -------cAUAUAGCUUAGGUGUUAAu -3'
miRNA:   3'- cucacccaUAUAUCGAAUCCACAAUU- -5'
28284 5' -45.8 NC_005902.1 + 100020 0.68 0.999821
Target:  5'- -------aAUAUAGCUUAGGUGUUAAu -3'
miRNA:   3'- cucacccaUAUAUCGAAUCCACAAUU- -5'
28284 5' -45.8 NC_005902.1 + 85940 0.68 0.999821
Target:  5'- -------aAUAUAGCUUAGGUGUUAAu -3'
miRNA:   3'- cucacccaUAUAUCGAAUCCACAAUU- -5'
28284 5' -45.8 NC_005902.1 + 44102 0.68 0.999768
Target:  5'- aAGUGaGUAUAUAGUUUAGcUGUUAAa -3'
miRNA:   3'- cUCACcCAUAUAUCGAAUCcACAAUU- -5'
28284 5' -45.8 NC_005902.1 + 42400 0.68 0.999702
Target:  5'- -----aGUAUAUAGCUUAGGUGUc-- -3'
miRNA:   3'- cucaccCAUAUAUCGAAUCCACAauu -5'
28284 5' -45.8 NC_005902.1 + 38452 0.68 0.999621
Target:  5'- ------aUAUAUAGCUUAGGUGUUAc -3'
miRNA:   3'- cucacccAUAUAUCGAAUCCACAAUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.