miRNA display CGI


Results 1 - 20 of 88 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28285 5' -41.3 NC_005902.1 + 148352 0.67 1
Target:  5'- --uUACAG-CUUUAGGAUUUAGAGa- -3'
miRNA:   3'- cuuAUGUUgGGAAUCCUAAAUUUCcu -5'
28285 5' -41.3 NC_005902.1 + 51401 0.66 1
Target:  5'- ---aACAACacaUUAGGAaUUAAAGGGu -3'
miRNA:   3'- cuuaUGUUGgg-AAUCCUaAAUUUCCU- -5'
28285 5' -41.3 NC_005902.1 + 75812 0.69 1
Target:  5'- ---aACAACCCcaaauuguggUUGGGAUgauaaUGGAGGAa -3'
miRNA:   3'- cuuaUGUUGGG----------AAUCCUAa----AUUUCCU- -5'
28285 5' -41.3 NC_005902.1 + 78939 0.69 1
Target:  5'- ----uCAACgCUUUAGGAgUUAAGGGAu -3'
miRNA:   3'- cuuauGUUG-GGAAUCCUaAAUUUCCU- -5'
28285 5' -41.3 NC_005902.1 + 161983 0.69 1
Target:  5'- ---aAUGACaCCUUAGGugUUAAAGGAu -3'
miRNA:   3'- cuuaUGUUG-GGAAUCCuaAAUUUCCU- -5'
28285 5' -41.3 NC_005902.1 + 100592 0.68 1
Target:  5'- -cAUAUAAgCCUUAGGAUUUAacccuuuacucuuAAGGc -3'
miRNA:   3'- cuUAUGUUgGGAAUCCUAAAU-------------UUCCu -5'
28285 5' -41.3 NC_005902.1 + 76145 0.68 1
Target:  5'- -uGUAUAAgCUUUAGGAUUUaAAAGGu -3'
miRNA:   3'- cuUAUGUUgGGAAUCCUAAA-UUUCCu -5'
28285 5' -41.3 NC_005902.1 + 147214 0.68 1
Target:  5'- ---aAC-ACCUUUGGGAUUUuguaauuGAGGAa -3'
miRNA:   3'- cuuaUGuUGGGAAUCCUAAAu------UUCCU- -5'
28285 5' -41.3 NC_005902.1 + 35079 0.68 1
Target:  5'- -----aAAgCCUUAGGAaUUAAAGGGu -3'
miRNA:   3'- cuuaugUUgGGAAUCCUaAAUUUCCU- -5'
28285 5' -41.3 NC_005902.1 + 81307 0.68 1
Target:  5'- -uGUAUAAUCgccAGGGUUUAAAGGAu -3'
miRNA:   3'- cuUAUGUUGGgaaUCCUAAAUUUCCU- -5'
28285 5' -41.3 NC_005902.1 + 68203 0.68 1
Target:  5'- ----uUAACCCUguauugaugauacuuUAGGAaUUAAAGGAu -3'
miRNA:   3'- cuuauGUUGGGA---------------AUCCUaAAUUUCCU- -5'
28285 5' -41.3 NC_005902.1 + 72027 0.66 1
Target:  5'- aGAAUugAACCUUUcAGGuUUUAAAGa- -3'
miRNA:   3'- -CUUAugUUGGGAA-UCCuAAAUUUCcu -5'
28285 5' -41.3 NC_005902.1 + 136258 0.67 1
Target:  5'- uGAGUAUAuagCUUAGGAgUUAAAGGGu -3'
miRNA:   3'- -CUUAUGUuggGAAUCCUaAAUUUCCU- -5'
28285 5' -41.3 NC_005902.1 + 170338 0.67 1
Target:  5'- ---cACAcuACCCUUGGGAaauccccaUUUAuuGGAa -3'
miRNA:   3'- cuuaUGU--UGGGAAUCCU--------AAAUuuCCU- -5'
28285 5' -41.3 NC_005902.1 + 176149 0.67 1
Target:  5'- uGAUGaua-CCUUAGGAgUUAAAGGGu -3'
miRNA:   3'- cUUAUguugGGAAUCCUaAAUUUCCU- -5'
28285 5' -41.3 NC_005902.1 + 87215 0.67 1
Target:  5'- ---aAUGAUaCCUUAGGGaUUAAAGGAu -3'
miRNA:   3'- cuuaUGUUG-GGAAUCCUaAAUUUCCU- -5'
28285 5' -41.3 NC_005902.1 + 139773 0.66 1
Target:  5'- -uAUAUAAgCCUUAGGGUUUAAc--- -3'
miRNA:   3'- cuUAUGUUgGGAAUCCUAAAUUuccu -5'
28285 5' -41.3 NC_005902.1 + 91274 0.66 1
Target:  5'- -----aAugCCUUAGGAgUUAAGGGu -3'
miRNA:   3'- cuuaugUugGGAAUCCUaAAUUUCCu -5'
28285 5' -41.3 NC_005902.1 + 61637 0.66 1
Target:  5'- uGAAUAUAGCaaauaUUAGGAUUUAAAaGAu -3'
miRNA:   3'- -CUUAUGUUGgg---AAUCCUAAAUUUcCU- -5'
28285 5' -41.3 NC_005902.1 + 50578 0.66 1
Target:  5'- uGAGUGaa--UgUUAGGAUUUAAAGGGu -3'
miRNA:   3'- -CUUAUguugGgAAUCCUAAAUUUCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.