miRNA display CGI


Results 1 - 20 of 212 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28286 3' -44.2 NC_005902.1 + 159505 0.66 1
Target:  5'- uAACCCUUUAAcAUUUAAGCUAUu--- -3'
miRNA:   3'- -UUGGGAAAUUcUGGAUUCGAUAuacg -5'
28286 3' -44.2 NC_005902.1 + 26257 0.66 1
Target:  5'- uACCCUUUAAuACUU-AGCUAUAUa- -3'
miRNA:   3'- uUGGGAAAUUcUGGAuUCGAUAUAcg -5'
28286 3' -44.2 NC_005902.1 + 135889 0.66 0.999999
Target:  5'- uAACUCUUUAAcAUUUAAGCUAUGUa- -3'
miRNA:   3'- -UUGGGAAAUUcUGGAUUCGAUAUAcg -5'
28286 3' -44.2 NC_005902.1 + 84931 0.66 0.999999
Target:  5'- cACCCUUUAAcACUUAAGCaAUAUa- -3'
miRNA:   3'- uUGGGAAAUUcUGGAUUCGaUAUAcg -5'
28286 3' -44.2 NC_005902.1 + 105996 0.66 0.999999
Target:  5'- aAACUCUUUAAcuCCUAAGUUGUucucaaugAUGCu -3'
miRNA:   3'- -UUGGGAAAUUcuGGAUUCGAUA--------UACG- -5'
28286 3' -44.2 NC_005902.1 + 100153 0.66 0.999999
Target:  5'- uAACCUUUUuauGCCUAAGUUAUAUa- -3'
miRNA:   3'- -UUGGGAAAuucUGGAUUCGAUAUAcg -5'
28286 3' -44.2 NC_005902.1 + 41020 0.66 0.999999
Target:  5'- uAAUCUUUUAAuACUUAAGCUAUAUa- -3'
miRNA:   3'- -UUGGGAAAUUcUGGAUUCGAUAUAcg -5'
28286 3' -44.2 NC_005902.1 + 76869 0.66 0.999999
Target:  5'- uAAUUCUUUAAuAUCUAAGCUAUAUa- -3'
miRNA:   3'- -UUGGGAAAUUcUGGAUUCGAUAUAcg -5'
28286 3' -44.2 NC_005902.1 + 142209 0.66 0.999999
Target:  5'- uAACCCUUUAAauCCUAAGgCU---UGCa -3'
miRNA:   3'- -UUGGGAAAUUcuGGAUUC-GAuauACG- -5'
28286 3' -44.2 NC_005902.1 + 16512 0.66 0.999999
Target:  5'- uAACCCUgUAAcACCUGAGaUAUAUaGCu -3'
miRNA:   3'- -UUGGGAaAUUcUGGAUUCgAUAUA-CG- -5'
28286 3' -44.2 NC_005902.1 + 58526 0.66 0.999999
Target:  5'- uACCCUUUAAGACUUc--CUGauUGCu -3'
miRNA:   3'- uUGGGAAAUUCUGGAuucGAUauACG- -5'
28286 3' -44.2 NC_005902.1 + 180348 0.67 0.999998
Target:  5'- uAAUUCUUUAAccCCUAAGCUAUAUa- -3'
miRNA:   3'- -UUGGGAAAUUcuGGAUUCGAUAUAcg -5'
28286 3' -44.2 NC_005902.1 + 157172 0.67 0.999998
Target:  5'- uGCCCUaggaaUUAAuACCUAAGUUAUAUa- -3'
miRNA:   3'- uUGGGA-----AAUUcUGGAUUCGAUAUAcg -5'
28286 3' -44.2 NC_005902.1 + 78855 0.67 0.999998
Target:  5'- uAACCUUUUAAccCUUAAGCUAUAUa- -3'
miRNA:   3'- -UUGGGAAAUUcuGGAUUCGAUAUAcg -5'
28286 3' -44.2 NC_005902.1 + 4193 0.67 0.999998
Target:  5'- uAACCUUUUAAuAUUUAAGCUAUAUa- -3'
miRNA:   3'- -UUGGGAAAUUcUGGAUUCGAUAUAcg -5'
28286 3' -44.2 NC_005902.1 + 86440 0.67 0.999998
Target:  5'- uAAUUCUUUAAcACUUAAGCUAUauacaaauaaGUGCa -3'
miRNA:   3'- -UUGGGAAAUUcUGGAUUCGAUA----------UACG- -5'
28286 3' -44.2 NC_005902.1 + 149197 0.67 0.999998
Target:  5'- uAAUuuUUUAAuACCUAAGCUAUAuacucauuugcUGCa -3'
miRNA:   3'- -UUGggAAAUUcUGGAUUCGAUAU-----------ACG- -5'
28286 3' -44.2 NC_005902.1 + 130952 0.67 0.999997
Target:  5'- uAAUCCUUUAAuACUUAAGUUAUAUa- -3'
miRNA:   3'- -UUGGGAAAUUcUGGAUUCGAUAUAcg -5'
28286 3' -44.2 NC_005902.1 + 135647 0.67 0.999997
Target:  5'- uAACCCUUUAAauCCUAAgGCUuAUAUGa -3'
miRNA:   3'- -UUGGGAAAUUcuGGAUU-CGA-UAUACg -5'
28286 3' -44.2 NC_005902.1 + 71186 0.67 0.999997
Target:  5'- uAACCCUUUAAccuuuuuaacACUUAAGCUAUAUa- -3'
miRNA:   3'- -UUGGGAAAUUc---------UGGAUUCGAUAUAcg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.