miRNA display CGI


Results 1 - 20 of 268 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28286 5' -40.1 NC_005902.1 + 49036 0.66 1
Target:  5'- ---gAUAaAGCUcUAGGagUUAAGGGGu -3'
miRNA:   3'- cuuaUAUaUCGA-AUCCagAAUUUCCC- -5'
28286 5' -40.1 NC_005902.1 + 130971 0.68 1
Target:  5'- --uUAUAUAcaagugaaCUUAGGUgUUAAAGGGu -3'
miRNA:   3'- cuuAUAUAUc-------GAAUCCAgAAUUUCCC- -5'
28286 5' -40.1 NC_005902.1 + 81949 0.68 1
Target:  5'- aAGUAUAUAGCUUAag---UAAAGGGu -3'
miRNA:   3'- cUUAUAUAUCGAAUccagaAUUUCCC- -5'
28286 5' -40.1 NC_005902.1 + 157112 0.68 1
Target:  5'- aAGUAUA-AGCuUUAGGaUUUAAAGGGu -3'
miRNA:   3'- cUUAUAUaUCG-AAUCCaGAAUUUCCC- -5'
28286 5' -40.1 NC_005902.1 + 114289 0.68 1
Target:  5'- aAGUAUGUAGUgUAGGUgUUAAAaGGu -3'
miRNA:   3'- cUUAUAUAUCGaAUCCAgAAUUUcCC- -5'
28286 5' -40.1 NC_005902.1 + 149076 0.68 1
Target:  5'- aAGUAUAUAGCUUAGGU---AAAGu- -3'
miRNA:   3'- cUUAUAUAUCGAAUCCAgaaUUUCcc -5'
28286 5' -40.1 NC_005902.1 + 116815 0.68 1
Target:  5'- gGAGUAUA---CUUAGGUgUUAAAGGu -3'
miRNA:   3'- -CUUAUAUaucGAAUCCAgAAUUUCCc -5'
28286 5' -40.1 NC_005902.1 + 100020 0.68 1
Target:  5'- ---aAUAUAGCUUAGGUgUUAAu--- -3'
miRNA:   3'- cuuaUAUAUCGAAUCCAgAAUUuccc -5'
28286 5' -40.1 NC_005902.1 + 97749 0.68 1
Target:  5'- ---cAUAUAGCUUAGGUgUUAAu--- -3'
miRNA:   3'- cuuaUAUAUCGAAUCCAgAAUUuccc -5'
28286 5' -40.1 NC_005902.1 + 145129 0.67 1
Target:  5'- ----uUAUAGCuUUAGGUaUUAAAGGa -3'
miRNA:   3'- cuuauAUAUCG-AAUCCAgAAUUUCCc -5'
28286 5' -40.1 NC_005902.1 + 49629 0.67 1
Target:  5'- --uUAUAUaAGcCUUAGGggUUAAAGGGu -3'
miRNA:   3'- cuuAUAUA-UC-GAAUCCagAAUUUCCC- -5'
28286 5' -40.1 NC_005902.1 + 41891 0.67 1
Target:  5'- uGAAUAUAUAGaUUAGGUaUUAAAGa- -3'
miRNA:   3'- -CUUAUAUAUCgAAUCCAgAAUUUCcc -5'
28286 5' -40.1 NC_005902.1 + 42558 0.66 1
Target:  5'- -cAUAUA-AGcCUUAGGaUUUAAAGGGu -3'
miRNA:   3'- cuUAUAUaUC-GAAUCCaGAAUUUCCC- -5'
28286 5' -40.1 NC_005902.1 + 84968 0.66 1
Target:  5'- -cAUAUAUAGUgUAGaUgUUAAAGGGu -3'
miRNA:   3'- cuUAUAUAUCGaAUCcAgAAUUUCCC- -5'
28286 5' -40.1 NC_005902.1 + 160922 0.66 1
Target:  5'- -uAUAUAUAGCaUAGaGU--UAAAGGGu -3'
miRNA:   3'- cuUAUAUAUCGaAUC-CAgaAUUUCCC- -5'
28286 5' -40.1 NC_005902.1 + 107830 0.66 1
Target:  5'- -cGUAUAUAGCUUAGaUgUUAAAGa- -3'
miRNA:   3'- cuUAUAUAUCGAAUCcAgAAUUUCcc -5'
28286 5' -40.1 NC_005902.1 + 44105 0.66 1
Target:  5'- uGAGUAUAUAGUUUAGcUgUUAAAGa- -3'
miRNA:   3'- -CUUAUAUAUCGAAUCcAgAAUUUCcc -5'
28286 5' -40.1 NC_005902.1 + 18790 0.67 1
Target:  5'- cGAAUAUAUAaCUUAGGUgUUAAAa-- -3'
miRNA:   3'- -CUUAUAUAUcGAAUCCAgAAUUUccc -5'
28286 5' -40.1 NC_005902.1 + 145372 0.67 1
Target:  5'- -uAUAUAUAGCUUAaacgUUAAAGGGu -3'
miRNA:   3'- cuUAUAUAUCGAAUccagAAUUUCCC- -5'
28286 5' -40.1 NC_005902.1 + 42399 0.67 1
Target:  5'- aAGUAUAUAGCUUAGGUg-------- -3'
miRNA:   3'- cUUAUAUAUCGAAUCCAgaauuuccc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.