miRNA display CGI


Results 1 - 20 of 300 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28291 3' -44.8 NC_005902.1 + 133560 0.66 0.999999
Target:  5'- aACCCUUUAaauCCUAGgGCU-UAUAUUCGu -3'
miRNA:   3'- -UGGGAAAU---GGAUU-CGAuAUAUGAGUg -5'
28291 3' -44.8 NC_005902.1 + 104900 0.66 0.999999
Target:  5'- uAUCCUUUAaauCCUAagGGUUGUAuucuuucacuaUACUCACu -3'
miRNA:   3'- -UGGGAAAU---GGAU--UCGAUAU-----------AUGAGUG- -5'
28291 3' -44.8 NC_005902.1 + 182559 0.66 0.999999
Target:  5'- cACUCgauuuuaacACCUAAGCUAUAUACa--- -3'
miRNA:   3'- -UGGGaaa------UGGAUUCGAUAUAUGagug -5'
28291 3' -44.8 NC_005902.1 + 163446 0.66 0.999999
Target:  5'- aACCCUUUAaauCCUAAgGCUAUAUAa---- -3'
miRNA:   3'- -UGGGAAAU---GGAUU-CGAUAUAUgagug -5'
28291 3' -44.8 NC_005902.1 + 43857 0.66 0.999998
Target:  5'- ----aUUAUUUAAGCUAUAUACUUAUu -3'
miRNA:   3'- ugggaAAUGGAUUCGAUAUAUGAGUG- -5'
28291 3' -44.8 NC_005902.1 + 114354 0.66 0.999998
Target:  5'- uAUUCUaacACCUAAGCUAUAUACa--- -3'
miRNA:   3'- -UGGGAaa-UGGAUUCGAUAUAUGagug -5'
28291 3' -44.8 NC_005902.1 + 139741 0.66 0.999998
Target:  5'- uAUCCUUUAaauCCUAAGgCUuauacuuguuugAUAUACUCAUu -3'
miRNA:   3'- -UGGGAAAU---GGAUUC-GA------------UAUAUGAGUG- -5'
28291 3' -44.8 NC_005902.1 + 120372 0.66 0.999998
Target:  5'- cCCCUUUAaauCCUAAgGCU-UAUACUUAUu -3'
miRNA:   3'- uGGGAAAU---GGAUU-CGAuAUAUGAGUG- -5'
28291 3' -44.8 NC_005902.1 + 22552 0.66 0.999997
Target:  5'- aAUCCUUUAaauCCUAAGgCUAuacuuguuugcUAUACUUACu -3'
miRNA:   3'- -UGGGAAAU---GGAUUC-GAU-----------AUAUGAGUG- -5'
28291 3' -44.8 NC_005902.1 + 5112 0.66 0.999997
Target:  5'- cACUCUUUaacAUCUAAGCaAUAUAUUUGCu -3'
miRNA:   3'- -UGGGAAA---UGGAUUCGaUAUAUGAGUG- -5'
28291 3' -44.8 NC_005902.1 + 42524 0.66 0.999997
Target:  5'- uACCCUUUAaauCCUAAcguuuGCUAc--ACUCACu -3'
miRNA:   3'- -UGGGAAAU---GGAUU-----CGAUauaUGAGUG- -5'
28291 3' -44.8 NC_005902.1 + 148751 0.66 0.999996
Target:  5'- uAUCCUUUaacACUUAAGCUAUAUGa--ACg -3'
miRNA:   3'- -UGGGAAA---UGGAUUCGAUAUAUgagUG- -5'
28291 3' -44.8 NC_005902.1 + 38417 0.66 0.999996
Target:  5'- ------cAUCUAAGCUAUAcACUCACu -3'
miRNA:   3'- ugggaaaUGGAUUCGAUAUaUGAGUG- -5'
28291 3' -44.8 NC_005902.1 + 135964 0.66 0.999996
Target:  5'- -----aUACCUAAGCUAUAUACa--- -3'
miRNA:   3'- ugggaaAUGGAUUCGAUAUAUGagug -5'
28291 3' -44.8 NC_005902.1 + 39416 0.66 0.999996
Target:  5'- -----aUACCUAAGCUAUAUACg--- -3'
miRNA:   3'- ugggaaAUGGAUUCGAUAUAUGagug -5'
28291 3' -44.8 NC_005902.1 + 8171 0.66 0.999996
Target:  5'- aAUCCUaacAUUUAAGCUAUAUACUUg- -3'
miRNA:   3'- -UGGGAaa-UGGAUUCGAUAUAUGAGug -5'
28291 3' -44.8 NC_005902.1 + 175611 0.67 0.999995
Target:  5'- uACCCUUuaaUACgUAAGCcGUAUACaaACa -3'
miRNA:   3'- -UGGGAA---AUGgAUUCGaUAUAUGagUG- -5'
28291 3' -44.8 NC_005902.1 + 130953 0.67 0.999995
Target:  5'- aAUCCUUuaaUACUUAAGUUAUAUACa--- -3'
miRNA:   3'- -UGGGAA---AUGGAUUCGAUAUAUGagug -5'
28291 3' -44.8 NC_005902.1 + 12541 0.67 0.999995
Target:  5'- aACCCUUuaaUACCUAAaUUAUAUACaaACa -3'
miRNA:   3'- -UGGGAA---AUGGAUUcGAUAUAUGagUG- -5'
28291 3' -44.8 NC_005902.1 + 32983 0.67 0.999995
Target:  5'- ------cACCUAAaCUAUAUACUCACu -3'
miRNA:   3'- ugggaaaUGGAUUcGAUAUAUGAGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.