miRNA display CGI


Results 41 - 60 of 289 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28292 3' -38.8 NC_005902.1 + 26490 0.77 0.999934
Target:  5'- aAUCU--UAACAUCUAAacuGCUAUAUACa -3'
miRNA:   3'- gUAGAaaAUUGUAGGUU---CGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 27779 0.69 1
Target:  5'- aCAUCcUUUAAUGUCUAAaCUAUAUAUg -3'
miRNA:   3'- -GUAGaAAAUUGUAGGUUcGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 28151 0.86 0.958404
Target:  5'- uUAUCUUUUAACAcCUAAGCUAUAUAa -3'
miRNA:   3'- -GUAGAAAAUUGUaGGUUCGAUAUAUg -5'
28292 3' -38.8 NC_005902.1 + 29088 0.81 0.996972
Target:  5'- aAUCcUUUAAUAUUUAAGCUAUAUACu -3'
miRNA:   3'- gUAGaAAAUUGUAGGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 29203 0.75 0.999998
Target:  5'- aAUCUUUUAACucuuuaacacCUAAGCUAUAUAUg -3'
miRNA:   3'- gUAGAAAAUUGua--------GGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 29569 0.87 0.949451
Target:  5'- --cUUUUUAAUAUCCAAGCUAUAUAUu -3'
miRNA:   3'- guaGAAAAUUGUAGGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 29612 0.8 0.999099
Target:  5'- ----cUUUAACAUUUAAGCUAUAUACu -3'
miRNA:   3'- guagaAAAUUGUAGGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 30800 0.88 0.921773
Target:  5'- ----cUUUAACAUCUAAGCUAUAUACg -3'
miRNA:   3'- guagaAAAUUGUAGGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 31088 0.8 0.999099
Target:  5'- --cCUUUUAACAcCCAAGCUAUGaACa -3'
miRNA:   3'- guaGAAAAUUGUaGGUUCGAUAUaUG- -5'
28292 3' -38.8 NC_005902.1 + 31419 0.71 1
Target:  5'- ----cUUUAAUAcCUAAGCUAUAUACa -3'
miRNA:   3'- guagaAAAUUGUaGGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 32357 0.68 1
Target:  5'- -----gUUAACAUCUAAaCUAUAUACu -3'
miRNA:   3'- guagaaAAUUGUAGGUUcGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 32863 0.66 1
Target:  5'- uUAUCUUUUAAUA-CCuaAAGCU-UAUACu -3'
miRNA:   3'- -GUAGAAAAUUGUaGG--UUCGAuAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 33080 0.69 1
Target:  5'- aAUCUUUUAA-AUCCuaAGGCUuAUAUACa -3'
miRNA:   3'- gUAGAAAAUUgUAGG--UUCGA-UAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 34817 0.69 1
Target:  5'- ----cUUUAACAcCUAAGUUAUAUACu -3'
miRNA:   3'- guagaAAAUUGUaGGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 36163 0.92 0.774227
Target:  5'- --cCUUUUAACAUCUAAGCUAUAUAUa -3'
miRNA:   3'- guaGAAAAUUGUAGGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 36800 0.69 1
Target:  5'- --cCUUUUAACAcUUAAGCUAUAcACa -3'
miRNA:   3'- guaGAAAAUUGUaGGUUCGAUAUaUG- -5'
28292 3' -38.8 NC_005902.1 + 37199 0.67 1
Target:  5'- --cCUUUUAauacAUAUUUAAGCUAUAUAUu -3'
miRNA:   3'- guaGAAAAU----UGUAGGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 37256 0.74 1
Target:  5'- uUAUCU--UAACAcUUAAGCUAUAUACa -3'
miRNA:   3'- -GUAGAaaAUUGUaGGUUCGAUAUAUG- -5'
28292 3' -38.8 NC_005902.1 + 37766 0.78 0.999729
Target:  5'- uUAUCUUUUAACAcCUAAGCUugcUAUGCu -3'
miRNA:   3'- -GUAGAAAAUUGUaGGUUCGAu--AUAUG- -5'
28292 3' -38.8 NC_005902.1 + 38412 0.74 0.999999
Target:  5'- -----aUUAACAUCUAAGCUAUAcACu -3'
miRNA:   3'- guagaaAAUUGUAGGUUCGAUAUaUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.