miRNA display CGI


Results 1 - 20 of 92 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28292 5' -43.3 NC_005902.1 + 137662 0.66 1
Target:  5'- -aGUaCAUAaCUUaGGUGUUAAAGGGu -3'
miRNA:   3'- aaCAaGUAUcGAAcCCACAAUUUUCC- -5'
28292 5' -43.3 NC_005902.1 + 162687 0.66 1
Target:  5'- gUGgugUCAUcGCUUaaaGGG-GUUAAAGGGu -3'
miRNA:   3'- aACa--AGUAuCGAA---CCCaCAAUUUUCC- -5'
28292 5' -43.3 NC_005902.1 + 104118 0.66 1
Target:  5'- ---cUCAUGGCUUaGaUGUUAAAGGGu -3'
miRNA:   3'- aacaAGUAUCGAAcCcACAAUUUUCC- -5'
28292 5' -43.3 NC_005902.1 + 8456 0.67 1
Target:  5'- -----aAUAGUUUaGGUGUUAAAAGGu -3'
miRNA:   3'- aacaagUAUCGAAcCCACAAUUUUCC- -5'
28292 5' -43.3 NC_005902.1 + 154623 0.66 1
Target:  5'- uUUGUaUAUAGCUUaGGUaUUAAAGGGu -3'
miRNA:   3'- -AACAaGUAUCGAAcCCAcAAUUUUCC- -5'
28292 5' -43.3 NC_005902.1 + 131153 0.66 1
Target:  5'- uUUGUaUAUAGCUUaGGUaUUAAAGGGu -3'
miRNA:   3'- -AACAaGUAUCGAAcCCAcAAUUUUCC- -5'
28292 5' -43.3 NC_005902.1 + 1185 0.66 1
Target:  5'- -------cAGCUUaGGUGUUAAAGGGu -3'
miRNA:   3'- aacaaguaUCGAAcCCACAAUUUUCC- -5'
28292 5' -43.3 NC_005902.1 + 37286 0.67 1
Target:  5'- -cGUUCAuaUAGCUUaaGUGUUAAAGGa -3'
miRNA:   3'- aaCAAGU--AUCGAAccCACAAUUUUCc -5'
28292 5' -43.3 NC_005902.1 + 135930 0.66 1
Target:  5'- -aGUaUGUAGCUUaGGUGUUAggaucAAAGGg -3'
miRNA:   3'- aaCAaGUAUCGAAcCCACAAU-----UUUCC- -5'
28292 5' -43.3 NC_005902.1 + 55157 0.67 1
Target:  5'- gUGUaUAUAGCUUGaGaGUUAAAGGGu -3'
miRNA:   3'- aACAaGUAUCGAACcCaCAAUUUUCC- -5'
28292 5' -43.3 NC_005902.1 + 145072 0.66 1
Target:  5'- gUGUaUAUAGCUUaGGUaUUAAAGGGu -3'
miRNA:   3'- aACAaGUAUCGAAcCCAcAAUUUUCC- -5'
28292 5' -43.3 NC_005902.1 + 164876 0.66 1
Target:  5'- ----aUAUAGCUUaaGUGUUAAAGGGa -3'
miRNA:   3'- aacaaGUAUCGAAccCACAAUUUUCC- -5'
28292 5' -43.3 NC_005902.1 + 63270 0.66 1
Target:  5'- aUGUUCAuaUAGCUUaaagGUUAAAGGGu -3'
miRNA:   3'- aACAAGU--AUCGAAcccaCAAUUUUCC- -5'
28292 5' -43.3 NC_005902.1 + 13436 0.68 0.999999
Target:  5'- -aGUaUAUAGCUUaaGUGUUAAAGGGu -3'
miRNA:   3'- aaCAaGUAUCGAAccCACAAUUUUCC- -5'
28292 5' -43.3 NC_005902.1 + 99649 0.68 0.999998
Target:  5'- cUUGUaUAUAGCUUaGGUGUUAAAGa- -3'
miRNA:   3'- -AACAaGUAUCGAAcCCACAAUUUUcc -5'
28292 5' -43.3 NC_005902.1 + 105305 0.68 0.999997
Target:  5'- uUUGUaUAUAGCUUaGGUGUUAAAGa- -3'
miRNA:   3'- -AACAaGUAUCGAAcCCACAAUUUUcc -5'
28292 5' -43.3 NC_005902.1 + 52365 0.68 0.999997
Target:  5'- uUUGUaUAUAGCUUaGGUGUUAAAGa- -3'
miRNA:   3'- -AACAaGUAUCGAAcCCACAAUUUUcc -5'
28292 5' -43.3 NC_005902.1 + 65799 0.68 0.999997
Target:  5'- ----aUAUAGCUcaGGUGUUAAAGGGu -3'
miRNA:   3'- aacaaGUAUCGAacCCACAAUUUUCC- -5'
28292 5' -43.3 NC_005902.1 + 58263 0.68 0.999997
Target:  5'- -aGUaUAUAGCUUcaGUGUUAAAAGGu -3'
miRNA:   3'- aaCAaGUAUCGAAccCACAAUUUUCC- -5'
28292 5' -43.3 NC_005902.1 + 146942 0.68 0.999997
Target:  5'- uUUGUaUAUAGCUUaGGUGUUAAAGa- -3'
miRNA:   3'- -AACAaGUAUCGAAcCCACAAUUUUcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.