miRNA display CGI


Results 1 - 20 of 126 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28293 5' -43 NC_005902.1 + 52846 0.66 1
Target:  5'- uUAACUCCauac-CGUUGUUAAUGACAu -3'
miRNA:   3'- -AUUGAGGauuccGUAGCAAUUAUUGU- -5'
28293 5' -43 NC_005902.1 + 165884 0.67 1
Target:  5'- uUAACUUCUAAGGUGUCau---UAACAc -3'
miRNA:   3'- -AUUGAGGAUUCCGUAGcaauuAUUGU- -5'
28293 5' -43 NC_005902.1 + 165782 0.67 1
Target:  5'- aUAACUCCUAAaaCAUCaUUGAUGAUAu -3'
miRNA:   3'- -AUUGAGGAUUccGUAGcAAUUAUUGU- -5'
28293 5' -43 NC_005902.1 + 73628 0.67 1
Target:  5'- uUAACUCUUAAG---UUGUUGAUAACAc -3'
miRNA:   3'- -AUUGAGGAUUCcguAGCAAUUAUUGU- -5'
28293 5' -43 NC_005902.1 + 149985 0.67 1
Target:  5'- uUGACa-CUAAuGCAUUGUUGAUGACAc -3'
miRNA:   3'- -AUUGagGAUUcCGUAGCAAUUAUUGU- -5'
28293 5' -43 NC_005902.1 + 116765 0.66 1
Target:  5'- -uACUCCUAAaacaucauugacGacauuGCAUCGUUAAUGAUAa -3'
miRNA:   3'- auUGAGGAUU------------C-----CGUAGCAAUUAUUGU- -5'
28293 5' -43 NC_005902.1 + 11443 0.66 1
Target:  5'- uUAAUUCUUAAaaaGUAUUGUUGAUAACGc -3'
miRNA:   3'- -AUUGAGGAUUc--CGUAGCAAUUAUUGU- -5'
28293 5' -43 NC_005902.1 + 19950 0.66 1
Target:  5'- cAACUCCaua--CAUUGUUAAUGACAu -3'
miRNA:   3'- aUUGAGGauuccGUAGCAAUUAUUGU- -5'
28293 5' -43 NC_005902.1 + 63113 0.66 1
Target:  5'- uUAACUUUUAAGGCAUCaucaUUGAUAucCAa -3'
miRNA:   3'- -AUUGAGGAUUCCGUAGc---AAUUAUu-GU- -5'
28293 5' -43 NC_005902.1 + 122578 0.67 1
Target:  5'- aAAUUCUUAAgauGGCAUCGacgacgcaaagcaUUGAUAGCAa -3'
miRNA:   3'- aUUGAGGAUU---CCGUAGC-------------AAUUAUUGU- -5'
28293 5' -43 NC_005902.1 + 75032 0.67 1
Target:  5'- uUAACcUCUAAuGUAUUGUUAAUAACAc -3'
miRNA:   3'- -AUUGaGGAUUcCGUAGCAAUUAUUGU- -5'
28293 5' -43 NC_005902.1 + 91635 0.66 1
Target:  5'- uUAACUCuuuaCUAAGGUAUUaUUGAUAAUAc -3'
miRNA:   3'- -AUUGAG----GAUUCCGUAGcAAUUAUUGU- -5'
28293 5' -43 NC_005902.1 + 107247 0.68 0.999999
Target:  5'- uUAACUCUUAAGGUguuaucaacaaugcaAagcaUUGUUGAUAACAa -3'
miRNA:   3'- -AUUGAGGAUUCCG---------------U----AGCAAUUAUUGU- -5'
28293 5' -43 NC_005902.1 + 103626 0.68 0.999999
Target:  5'- uUAACUCCUAAgauauuauugauguGGUGUUaUUGAUGACAc -3'
miRNA:   3'- -AUUGAGGAUU--------------CCGUAGcAAUUAUUGU- -5'
28293 5' -43 NC_005902.1 + 8292 0.68 0.999998
Target:  5'- uUAACUCUUGAGGUGcUGUUGAUGc-- -3'
miRNA:   3'- -AUUGAGGAUUCCGUaGCAAUUAUugu -5'
28293 5' -43 NC_005902.1 + 105956 0.69 0.999997
Target:  5'- -uACUCCUGAGGUA--GUUGAU-GCAu -3'
miRNA:   3'- auUGAGGAUUCCGUagCAAUUAuUGU- -5'
28293 5' -43 NC_005902.1 + 36758 0.69 0.999996
Target:  5'- ---aUCCUAAGGCAUCaucGAUGAUg -3'
miRNA:   3'- auugAGGAUUCCGUAGcaaUUAUUGu -5'
28293 5' -43 NC_005902.1 + 95461 0.69 0.999996
Target:  5'- uUAACUCUUAAGGUAUgaUUAAUAccACAa -3'
miRNA:   3'- -AUUGAGGAUUCCGUAgcAAUUAU--UGU- -5'
28293 5' -43 NC_005902.1 + 149034 0.69 0.999996
Target:  5'- uUAAUUUCUAAGGCAUCaucAAUGAUg -3'
miRNA:   3'- -AUUGAGGAUUCCGUAGcaaUUAUUGu -5'
28293 5' -43 NC_005902.1 + 75756 0.69 0.999994
Target:  5'- uUAACUCCUAAagcaccaucaauGacacaacGCAUUGUUAAUGACAu -3'
miRNA:   3'- -AUUGAGGAUU------------C-------CGUAGCAAUUAUUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.