miRNA display CGI


Results 1 - 20 of 413 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28294 3' -42.8 NC_005902.1 + 78078 0.66 1
Target:  5'- uUUUUAACcCUUAAGCUAUAUAUg-- -3'
miRNA:   3'- gGAAAUUGuGGAUUCGAUGUAUGagu -5'
28294 3' -42.8 NC_005902.1 + 5045 0.67 1
Target:  5'- cCCUUUAACuCCUAAa--GCGUugUCAa -3'
miRNA:   3'- -GGAAAUUGuGGAUUcgaUGUAugAGU- -5'
28294 3' -42.8 NC_005902.1 + 103886 0.67 1
Target:  5'- cCCUUUAaauccuaaaguuuAUACCUGcuuGCUACAUucACUUAu -3'
miRNA:   3'- -GGAAAU-------------UGUGGAUu--CGAUGUA--UGAGU- -5'
28294 3' -42.8 NC_005902.1 + 55129 0.67 1
Target:  5'- cCCUUUAAauCCUAAGCUAUAaACa-- -3'
miRNA:   3'- -GGAAAUUguGGAUUCGAUGUaUGagu -5'
28294 3' -42.8 NC_005902.1 + 112963 0.67 1
Target:  5'- cCCUUUAACACaUAAGUaAUAUACa-- -3'
miRNA:   3'- -GGAAAUUGUGgAUUCGaUGUAUGagu -5'
28294 3' -42.8 NC_005902.1 + 97050 0.67 1
Target:  5'- cUCUUUAACuCCUAAaGC-AUAUACUUAu -3'
miRNA:   3'- -GGAAAUUGuGGAUU-CGaUGUAUGAGU- -5'
28294 3' -42.8 NC_005902.1 + 90612 0.67 1
Target:  5'- ----aAACACCUAAGCUGUAUAUg-- -3'
miRNA:   3'- ggaaaUUGUGGAUUCGAUGUAUGagu -5'
28294 3' -42.8 NC_005902.1 + 23979 0.67 1
Target:  5'- uCCUUUAACAUCUAAaCUAUAUAa--- -3'
miRNA:   3'- -GGAAAUUGUGGAUUcGAUGUAUgagu -5'
28294 3' -42.8 NC_005902.1 + 139069 0.68 1
Target:  5'- -aUUUAAagaaUUAAGCUAUAUACUCAc -3'
miRNA:   3'- ggAAAUUgug-GAUUCGAUGUAUGAGU- -5'
28294 3' -42.8 NC_005902.1 + 18583 0.67 1
Target:  5'- --gUUAACuCCUAAGUUAUAUACa-- -3'
miRNA:   3'- ggaAAUUGuGGAUUCGAUGUAUGagu -5'
28294 3' -42.8 NC_005902.1 + 63098 0.67 1
Target:  5'- aCUUaAACACUUAAGCaAUAUACa-- -3'
miRNA:   3'- gGAAaUUGUGGAUUCGaUGUAUGagu -5'
28294 3' -42.8 NC_005902.1 + 164701 0.67 1
Target:  5'- -aUUUAAUGCCUAAGCUAUAa----- -3'
miRNA:   3'- ggAAAUUGUGGAUUCGAUGUaugagu -5'
28294 3' -42.8 NC_005902.1 + 68959 0.66 1
Target:  5'- --gUUAAUACUUAAGCUAUAUAa--- -3'
miRNA:   3'- ggaAAUUGUGGAUUCGAUGUAUgagu -5'
28294 3' -42.8 NC_005902.1 + 136893 0.66 1
Target:  5'- -aUUUAACACCcAAGUUAUAUAUa-- -3'
miRNA:   3'- ggAAAUUGUGGaUUCGAUGUAUGagu -5'
28294 3' -42.8 NC_005902.1 + 175613 0.66 1
Target:  5'- cCCUUUAAUACgUAAGCcgUAUACa-- -3'
miRNA:   3'- -GGAAAUUGUGgAUUCGauGUAUGagu -5'
28294 3' -42.8 NC_005902.1 + 143643 0.66 1
Target:  5'- cCUUUUAACAUCUAAGUUAUAa----- -3'
miRNA:   3'- -GGAAAUUGUGGAUUCGAUGUaugagu -5'
28294 3' -42.8 NC_005902.1 + 76024 0.66 1
Target:  5'- cCCUUUAACuCCUAAGgUAUuaucaauaAUGCUUu -3'
miRNA:   3'- -GGAAAUUGuGGAUUCgAUG--------UAUGAGu -5'
28294 3' -42.8 NC_005902.1 + 1629 0.66 1
Target:  5'- --gUUAAUAUCUAAGUaAUAUACUUAu -3'
miRNA:   3'- ggaAAUUGUGGAUUCGaUGUAUGAGU- -5'
28294 3' -42.8 NC_005902.1 + 4775 0.66 1
Target:  5'- gUUUUAAC-CCUAcGCUAUAUACa-- -3'
miRNA:   3'- gGAAAUUGuGGAUuCGAUGUAUGagu -5'
28294 3' -42.8 NC_005902.1 + 162808 0.67 1
Target:  5'- --gUUAAUAUCUAAGCuUGCAUauaGCUUAg -3'
miRNA:   3'- ggaAAUUGUGGAUUCG-AUGUA---UGAGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.