miRNA display CGI


Results 1 - 20 of 106 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28294 5' -42.7 NC_005902.1 + 42400 0.66 1
Target:  5'- ----aGUaUAUAGCUUAGGUGUc--- -3'
miRNA:   3'- aaacaCAcAUAUCGAAUCCACAauuu -5'
28294 5' -42.7 NC_005902.1 + 30823 0.66 1
Target:  5'- cUUGUuUGUAuaUAGCUUAGaUGUUAAAg -3'
miRNA:   3'- aAACAcACAU--AUCGAAUCcACAAUUU- -5'
28294 5' -42.7 NC_005902.1 + 136284 0.66 1
Target:  5'- -------aUAUAGUUUAGGUGUUGAGa -3'
miRNA:   3'- aaacacacAUAUCGAAUCCACAAUUU- -5'
28294 5' -42.7 NC_005902.1 + 113819 0.67 1
Target:  5'- -aUGUauaUAUAGUUUAGGUGUUAAc -3'
miRNA:   3'- aaACAcacAUAUCGAAUCCACAAUUu -5'
28294 5' -42.7 NC_005902.1 + 5690 0.67 1
Target:  5'- ---uUGUaUAUAGCUUAGGgGUUAAAg -3'
miRNA:   3'- aaacACAcAUAUCGAAUCCaCAAUUU- -5'
28294 5' -42.7 NC_005902.1 + 104990 0.66 1
Target:  5'- -----uUGUAUAGCUUAGaUGUUAAAa -3'
miRNA:   3'- aaacacACAUAUCGAAUCcACAAUUU- -5'
28294 5' -42.7 NC_005902.1 + 63393 0.66 1
Target:  5'- cUUGUuUGUAuaUAGCUUAGaUGUUAAAg -3'
miRNA:   3'- aAACAcACAU--AUCGAAUCcACAAUUU- -5'
28294 5' -42.7 NC_005902.1 + 165973 0.66 1
Target:  5'- cUUGUuUGUAUauGGCUUAuGUGUUAAAg -3'
miRNA:   3'- aAACAcACAUA--UCGAAUcCACAAUUU- -5'
28294 5' -42.7 NC_005902.1 + 117100 0.67 1
Target:  5'- aUUUGUuUGUAuaUAGCUUAaGUGUUAAAa -3'
miRNA:   3'- -AAACAcACAU--AUCGAAUcCACAAUUU- -5'
28294 5' -42.7 NC_005902.1 + 49991 0.67 1
Target:  5'- --aGUGaGUAuaUAGCUUAGGaGUUAAAg -3'
miRNA:   3'- aaaCACaCAU--AUCGAAUCCaCAAUUU- -5'
28294 5' -42.7 NC_005902.1 + 184889 0.67 1
Target:  5'- cUUGUuUGUAUacAGCUUAGGUcUUAAAg -3'
miRNA:   3'- aAACAcACAUA--UCGAAUCCAcAAUUU- -5'
28294 5' -42.7 NC_005902.1 + 116657 0.67 0.999999
Target:  5'- --aGUGaGUAuaauaagcauaUAGUUUAGGUGUUAAAc -3'
miRNA:   3'- aaaCACaCAU-----------AUCGAAUCCACAAUUU- -5'
28294 5' -42.7 NC_005902.1 + 71492 0.68 0.999999
Target:  5'- aUUUGUuuaUAUAGCcUAGGUGUUAAAg -3'
miRNA:   3'- -AAACAcacAUAUCGaAUCCACAAUUU- -5'
28294 5' -42.7 NC_005902.1 + 92196 0.67 0.999999
Target:  5'- aUUGUuUGUAuaUAGCUUAGGUaUUAAAu -3'
miRNA:   3'- aAACAcACAU--AUCGAAUCCAcAAUUU- -5'
28294 5' -42.7 NC_005902.1 + 25157 0.67 0.999999
Target:  5'- --aGUGaGUAuaUAGCUUAGGgGUUAAAu -3'
miRNA:   3'- aaaCACaCAU--AUCGAAUCCaCAAUUU- -5'
28294 5' -42.7 NC_005902.1 + 38454 0.68 0.999999
Target:  5'- -------aUAUAGCUUAGGUGUUAc- -3'
miRNA:   3'- aaacacacAUAUCGAAUCCACAAUuu -5'
28294 5' -42.7 NC_005902.1 + 179786 0.68 0.999999
Target:  5'- --aGUGUauaUAUGGCUUcGGUGUUAAc -3'
miRNA:   3'- aaaCACAc--AUAUCGAAuCCACAAUUu -5'
28294 5' -42.7 NC_005902.1 + 38285 0.68 0.999999
Target:  5'- -aUGUGguUAUAGCUUAGaUGUUAAAg -3'
miRNA:   3'- aaACACacAUAUCGAAUCcACAAUUU- -5'
28294 5' -42.7 NC_005902.1 + 154619 0.67 0.999999
Target:  5'- cUUGUuUGUAuaUAGCUUAGGUaUUAAAg -3'
miRNA:   3'- aAACAcACAU--AUCGAAUCCAcAAUUU- -5'
28294 5' -42.7 NC_005902.1 + 137782 0.69 0.99999
Target:  5'- -aUGUGUauaUAUAGCUUAaGUGUUAAAg -3'
miRNA:   3'- aaACACAc--AUAUCGAAUcCACAAUUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.