Results 1 - 20 of 106 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
28294 | 5' | -42.7 | NC_005902.1 | + | 49991 | 0.67 | 1 |
Target: 5'- --aGUGaGUAuaUAGCUUAGGaGUUAAAg -3' miRNA: 3'- aaaCACaCAU--AUCGAAUCCaCAAUUU- -5' |
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28294 | 5' | -42.7 | NC_005902.1 | + | 113819 | 0.67 | 1 |
Target: 5'- -aUGUauaUAUAGUUUAGGUGUUAAc -3' miRNA: 3'- aaACAcacAUAUCGAAUCCACAAUUu -5' |
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28294 | 5' | -42.7 | NC_005902.1 | + | 136284 | 0.66 | 1 |
Target: 5'- -------aUAUAGUUUAGGUGUUGAGa -3' miRNA: 3'- aaacacacAUAUCGAAUCCACAAUUU- -5' |
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28294 | 5' | -42.7 | NC_005902.1 | + | 30823 | 0.66 | 1 |
Target: 5'- cUUGUuUGUAuaUAGCUUAGaUGUUAAAg -3' miRNA: 3'- aAACAcACAU--AUCGAAUCcACAAUUU- -5' |
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28294 | 5' | -42.7 | NC_005902.1 | + | 165973 | 0.66 | 1 |
Target: 5'- cUUGUuUGUAUauGGCUUAuGUGUUAAAg -3' miRNA: 3'- aAACAcACAUA--UCGAAUcCACAAUUU- -5' |
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28294 | 5' | -42.7 | NC_005902.1 | + | 5690 | 0.67 | 1 |
Target: 5'- ---uUGUaUAUAGCUUAGGgGUUAAAg -3' miRNA: 3'- aaacACAcAUAUCGAAUCCaCAAUUU- -5' |
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28294 | 5' | -42.7 | NC_005902.1 | + | 63393 | 0.66 | 1 |
Target: 5'- cUUGUuUGUAuaUAGCUUAGaUGUUAAAg -3' miRNA: 3'- aAACAcACAU--AUCGAAUCcACAAUUU- -5' |
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28294 | 5' | -42.7 | NC_005902.1 | + | 104990 | 0.66 | 1 |
Target: 5'- -----uUGUAUAGCUUAGaUGUUAAAa -3' miRNA: 3'- aaacacACAUAUCGAAUCcACAAUUU- -5' |
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28294 | 5' | -42.7 | NC_005902.1 | + | 117100 | 0.67 | 1 |
Target: 5'- aUUUGUuUGUAuaUAGCUUAaGUGUUAAAa -3' miRNA: 3'- -AAACAcACAU--AUCGAAUcCACAAUUU- -5' |
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28294 | 5' | -42.7 | NC_005902.1 | + | 184889 | 0.67 | 1 |
Target: 5'- cUUGUuUGUAUacAGCUUAGGUcUUAAAg -3' miRNA: 3'- aAACAcACAUA--UCGAAUCCAcAAUUU- -5' |
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28294 | 5' | -42.7 | NC_005902.1 | + | 42400 | 0.66 | 1 |
Target: 5'- ----aGUaUAUAGCUUAGGUGUc--- -3' miRNA: 3'- aaacaCAcAUAUCGAAUCCACAauuu -5' |
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28294 | 5' | -42.7 | NC_005902.1 | + | 38285 | 0.68 | 0.999999 |
Target: 5'- -aUGUGguUAUAGCUUAGaUGUUAAAg -3' miRNA: 3'- aaACACacAUAUCGAAUCcACAAUUU- -5' |
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28294 | 5' | -42.7 | NC_005902.1 | + | 179786 | 0.68 | 0.999999 |
Target: 5'- --aGUGUauaUAUGGCUUcGGUGUUAAc -3' miRNA: 3'- aaaCACAc--AUAUCGAAuCCACAAUUu -5' |
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28294 | 5' | -42.7 | NC_005902.1 | + | 25157 | 0.67 | 0.999999 |
Target: 5'- --aGUGaGUAuaUAGCUUAGGgGUUAAAu -3' miRNA: 3'- aaaCACaCAU--AUCGAAUCCaCAAUUU- -5' |
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28294 | 5' | -42.7 | NC_005902.1 | + | 92196 | 0.67 | 0.999999 |
Target: 5'- aUUGUuUGUAuaUAGCUUAGGUaUUAAAu -3' miRNA: 3'- aAACAcACAU--AUCGAAUCCAcAAUUU- -5' |
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28294 | 5' | -42.7 | NC_005902.1 | + | 38454 | 0.68 | 0.999999 |
Target: 5'- -------aUAUAGCUUAGGUGUUAc- -3' miRNA: 3'- aaacacacAUAUCGAAUCCACAAUuu -5' |
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28294 | 5' | -42.7 | NC_005902.1 | + | 116657 | 0.67 | 0.999999 |
Target: 5'- --aGUGaGUAuaauaagcauaUAGUUUAGGUGUUAAAc -3' miRNA: 3'- aaaCACaCAU-----------AUCGAAUCCACAAUUU- -5' |
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28294 | 5' | -42.7 | NC_005902.1 | + | 154619 | 0.67 | 0.999999 |
Target: 5'- cUUGUuUGUAuaUAGCUUAGGUaUUAAAg -3' miRNA: 3'- aAACAcACAU--AUCGAAUCCAcAAUUU- -5' |
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28294 | 5' | -42.7 | NC_005902.1 | + | 71492 | 0.68 | 0.999999 |
Target: 5'- aUUUGUuuaUAUAGCcUAGGUGUUAAAg -3' miRNA: 3'- -AAACAcacAUAUCGaAUCCACAAUUU- -5' |
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28294 | 5' | -42.7 | NC_005902.1 | + | 137782 | 0.69 | 0.99999 |
Target: 5'- -aUGUGUauaUAUAGCUUAaGUGUUAAAg -3' miRNA: 3'- aaACACAc--AUAUCGAAUcCACAAUUU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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