miRNA display CGI


Results 1 - 20 of 182 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28296 3' -41.6 NC_005902.1 + 145945 0.66 1
Target:  5'- aCCCUUUAACaUCUAAGcu--AUAUACu -3'
miRNA:   3'- -GGGGAAUUGaGGAUUCaaauUAUGUG- -5'
28296 3' -41.6 NC_005902.1 + 111229 0.67 1
Target:  5'- aCCUUUUAACaCCUAAGcuauauAUACACu -3'
miRNA:   3'- -GGGGAAUUGaGGAUUCaaau--UAUGUG- -5'
28296 3' -41.6 NC_005902.1 + 46255 0.67 1
Target:  5'- aCCCUUUAAaUCCUAAGgcuuAUAUAa -3'
miRNA:   3'- -GGGGAAUUgAGGAUUCaaauUAUGUg -5'
28296 3' -41.6 NC_005902.1 + 172815 0.67 1
Target:  5'- aCCCUUUAACaCCUAAGcu--AUAUAUg -3'
miRNA:   3'- -GGGGAAUUGaGGAUUCaaauUAUGUG- -5'
28296 3' -41.6 NC_005902.1 + 155212 0.67 1
Target:  5'- aCCCUUUAACaUCUAAGcu--AUAUACa -3'
miRNA:   3'- -GGGGAAUUGaGGAUUCaaauUAUGUG- -5'
28296 3' -41.6 NC_005902.1 + 60466 0.67 1
Target:  5'- aCCCUUUAACaCCUAAGcu--AUAUAUa -3'
miRNA:   3'- -GGGGAAUUGaGGAUUCaaauUAUGUG- -5'
28296 3' -41.6 NC_005902.1 + 51849 0.67 1
Target:  5'- aCCCUUUAACaUCUAAGcu--AUAUACa -3'
miRNA:   3'- -GGGGAAUUGaGGAUUCaaauUAUGUG- -5'
28296 3' -41.6 NC_005902.1 + 104839 0.67 1
Target:  5'- aCCCaUUAACUCUUAAGgugUUGuUAUAUc -3'
miRNA:   3'- gGGG-AAUUGAGGAUUCa--AAUuAUGUG- -5'
28296 3' -41.6 NC_005902.1 + 97049 0.67 1
Target:  5'- aCUCUUUAACUCCUAAagc--AUAUACu -3'
miRNA:   3'- -GGGGAAUUGAGGAUUcaaauUAUGUG- -5'
28296 3' -41.6 NC_005902.1 + 135543 0.66 1
Target:  5'- aUCCUUUAACaCCUAAacuaGAUACACa -3'
miRNA:   3'- -GGGGAAUUGaGGAUUcaaaUUAUGUG- -5'
28296 3' -41.6 NC_005902.1 + 57298 0.66 1
Target:  5'- aCUCUUUAACUCCUuGGcacaccaaUAAUGCAUu -3'
miRNA:   3'- -GGGGAAUUGAGGAuUCaa------AUUAUGUG- -5'
28296 3' -41.6 NC_005902.1 + 146733 0.66 1
Target:  5'- aUCCUUUAACaCCUAAGcu--AUAUACa -3'
miRNA:   3'- -GGGGAAUUGaGGAUUCaaauUAUGUG- -5'
28296 3' -41.6 NC_005902.1 + 48461 0.66 1
Target:  5'- aCCUUUUAGCUCCUAuGgcauuaUUGAUAacaGCg -3'
miRNA:   3'- -GGGGAAUUGAGGAUuCa-----AAUUAUg--UG- -5'
28296 3' -41.6 NC_005902.1 + 148681 0.66 1
Target:  5'- aCUuuUUAACUCCUAAGgcaucucgaugACGCc -3'
miRNA:   3'- -GGggAAUUGAGGAUUCaaauua-----UGUG- -5'
28296 3' -41.6 NC_005902.1 + 81110 0.66 1
Target:  5'- -aCCUUAACcCUUAAGUU--AUAUACu -3'
miRNA:   3'- ggGGAAUUGaGGAUUCAAauUAUGUG- -5'
28296 3' -41.6 NC_005902.1 + 183213 0.66 1
Target:  5'- uUCUUUAGCUUUagAAGUUUcaAAUACACa -3'
miRNA:   3'- gGGGAAUUGAGGa-UUCAAA--UUAUGUG- -5'
28296 3' -41.6 NC_005902.1 + 98938 0.66 1
Target:  5'- aCCCUUUAACcCCUAAGcu--AUAUAa -3'
miRNA:   3'- -GGGGAAUUGaGGAUUCaaauUAUGUg -5'
28296 3' -41.6 NC_005902.1 + 174824 0.66 1
Target:  5'- uUCCUUAACUCUUAAGgcaucaucaaugACAUa -3'
miRNA:   3'- gGGGAAUUGAGGAUUCaaauua------UGUG- -5'
28296 3' -41.6 NC_005902.1 + 181315 0.66 1
Target:  5'- aCCCCUU-AUUCCUAAG----AUAUAUu -3'
miRNA:   3'- -GGGGAAuUGAGGAUUCaaauUAUGUG- -5'
28296 3' -41.6 NC_005902.1 + 98888 0.66 1
Target:  5'- ---aUUAACUCCUAAGUU--AUAUAUa -3'
miRNA:   3'- ggggAAUUGAGGAUUCAAauUAUGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.