miRNA display CGI


Results 1 - 20 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28301 5' -40.6 NC_005905.1 + 17042 0.66 1
Target:  5'- gCCGGGCUGGacUCGAUAAAcauaaucUUAUCu -3'
miRNA:   3'- -GGUUCGAUCgaAGCUGUUUaa-----AAUAG- -5'
28301 5' -40.6 NC_005905.1 + 17102 0.66 1
Target:  5'- cCCAAGCcaaccUGGUcUCGAuCAAAU-UUGUCg -3'
miRNA:   3'- -GGUUCG-----AUCGaAGCU-GUUUAaAAUAG- -5'
28301 5' -40.6 NC_005905.1 + 17212 0.66 1
Target:  5'- cCCAAGCcaaccUGGUcUCGAuCAAAU-UUGUCa -3'
miRNA:   3'- -GGUUCG-----AUCGaAGCU-GUUUAaAAUAG- -5'
28301 5' -40.6 NC_005905.1 + 17322 0.66 1
Target:  5'- cCCAAGCcaaccUGGUcUCGAuCAAAU-UUGUCa -3'
miRNA:   3'- -GGUUCG-----AUCGaAGCU-GUUUAaAAUAG- -5'
28301 5' -40.6 NC_005905.1 + 17432 0.66 1
Target:  5'- cCCAAGCcaaccUGGUcUCGAuCAAAU-UUGUCa -3'
miRNA:   3'- -GGUUCG-----AUCGaAGCU-GUUUAaAAUAG- -5'
28301 5' -40.6 NC_005905.1 + 49392 0.67 1
Target:  5'- -uGAGCcgaccgAGCcUCGAUAuAUUUUAUCa -3'
miRNA:   3'- ggUUCGa-----UCGaAGCUGUuUAAAAUAG- -5'
28301 5' -40.6 NC_005905.1 + 49302 0.67 1
Target:  5'- -uGAGCcgaccgAGCcUCGAUAuAUUUUAUCa -3'
miRNA:   3'- ggUUCGa-----UCGaAGCUGUuUAAAAUAG- -5'
28301 5' -40.6 NC_005905.1 + 17147 0.68 1
Target:  5'- cCCAAGCcgGGCUggacUCGAUAAAcauaaucUUAUCu -3'
miRNA:   3'- -GGUUCGa-UCGA----AGCUGUUUaa-----AAUAG- -5'
28301 5' -40.6 NC_005905.1 + 14666 0.66 1
Target:  5'- gCCGAGCaGGCUuuaUCGaACGAAUUg---- -3'
miRNA:   3'- -GGUUCGaUCGA---AGC-UGUUUAAaauag -5'
28301 5' -40.6 NC_005905.1 + 34905 0.66 1
Target:  5'- aCGAGUgAGUgUCGACGAAUUUa--- -3'
miRNA:   3'- gGUUCGaUCGaAGCUGUUUAAAauag -5'
28301 5' -40.6 NC_005905.1 + 22195 0.67 1
Target:  5'- gCCAAGCcGGUUUaaauaCGACAAAUccaggcUUGUCa -3'
miRNA:   3'- -GGUUCGaUCGAA-----GCUGUUUAa-----AAUAG- -5'
28301 5' -40.6 NC_005905.1 + 15447 0.66 1
Target:  5'- gCAAGCUGGCgaagcccuaCGACAGGcaugUAUUg -3'
miRNA:   3'- gGUUCGAUCGaa-------GCUGUUUaaa-AUAG- -5'
28301 5' -40.6 NC_005905.1 + 8829 0.66 1
Target:  5'- cCCAAGCcGGUUUgGACucGGUaaaaUUUGUCg -3'
miRNA:   3'- -GGUUCGaUCGAAgCUGu-UUA----AAAUAG- -5'
28301 5' -40.6 NC_005905.1 + 49077 0.67 1
Target:  5'- -uGAGCcaaccgAGCcUCGAUAuAUUUUAUCa -3'
miRNA:   3'- ggUUCGa-----UCGaAGCUGUuUAAAAUAG- -5'
28301 5' -40.6 NC_005905.1 + 49122 0.67 1
Target:  5'- -uGAGCcaaccgAGCcUCGAUAuAUUUUAUCa -3'
miRNA:   3'- ggUUCGa-----UCGaAGCUGUuUAAAAUAG- -5'
28301 5' -40.6 NC_005905.1 + 49167 0.67 1
Target:  5'- -uGAGCcgaccgAGCcUCGAUAuAUUUUAUCa -3'
miRNA:   3'- ggUUCGa-----UCGaAGCUGUuUAAAAUAG- -5'
28301 5' -40.6 NC_005905.1 + 49257 0.67 1
Target:  5'- -uGAGCcaaccgAGCcUCGAUAuAUUUUAUCa -3'
miRNA:   3'- ggUUCGa-----UCGaAGCUGUuUAAAAUAG- -5'
28301 5' -40.6 NC_005905.1 + 49212 0.67 1
Target:  5'- -uGAGCcaaccgAGCcUCGAUAuAUUUUAUCa -3'
miRNA:   3'- ggUUCGa-----UCGaAGCUGUuUAAAAUAG- -5'
28301 5' -40.6 NC_005905.1 + 49437 0.67 1
Target:  5'- -uGAGCcgaccgAGCcUCGAUAuAUUUUAUCa -3'
miRNA:   3'- ggUUCGa-----UCGaAGCUGUuUAAAAUAG- -5'
28301 5' -40.6 NC_005905.1 + 21924 0.66 1
Target:  5'- aCCGAaCUAGacUCGAUAAAaUUUGUCg -3'
miRNA:   3'- -GGUUcGAUCgaAGCUGUUUaAAAUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.