Results 1 - 20 of 63 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
28304 | 3' | -55.2 | NC_005905.1 | + | 49038 | 0.67 | 0.791923 |
Target: 5'- --cCGGCUUGaGCCGAcCgAGCUUCGg -3' miRNA: 3'- ccaGCCGAACcCGGUUcGaUCGAAGC- -5' |
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28304 | 3' | -55.2 | NC_005905.1 | + | 17132 | 0.67 | 0.762692 |
Target: 5'- --cCGGCUUGaGCCGAGUUAGUUaUGg -3' miRNA: 3'- ccaGCCGAACcCGGUUCGAUCGAaGC- -5' |
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28304 | 3' | -55.2 | NC_005905.1 | + | 17895 | 0.67 | 0.742552 |
Target: 5'- aGGcCGGUUUcuGUCAAGUUAGCUUUGa -3' miRNA: 3'- -CCaGCCGAAccCGGUUCGAUCGAAGC- -5' |
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28304 | 3' | -55.2 | NC_005905.1 | + | 11621 | 0.68 | 0.721987 |
Target: 5'- -aUCGGCUUGGauuuauCgAAGCUAGCUUgGc -3' miRNA: 3'- ccAGCCGAACCc-----GgUUCGAUCGAAgC- -5' |
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28304 | 3' | -55.2 | NC_005905.1 | + | 8572 | 0.71 | 0.510599 |
Target: 5'- cGGUuagcaCGGCUUGGaCCGAuuUAGCUUCGa -3' miRNA: 3'- -CCA-----GCCGAACCcGGUUcgAUCGAAGC- -5' |
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28304 | 3' | -55.2 | NC_005905.1 | + | 9128 | 0.71 | 0.510599 |
Target: 5'- --cCGGCUUGGGCaGAGUUAGCa--- -3' miRNA: 3'- ccaGCCGAACCCGgUUCGAUCGaagc -5' |
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28304 | 3' | -55.2 | NC_005905.1 | + | 22014 | 0.74 | 0.378194 |
Target: 5'- -uUCGGUUUGaaCCAAGUUAGCUUCGa -3' miRNA: 3'- ccAGCCGAACccGGUUCGAUCGAAGC- -5' |
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28304 | 3' | -55.2 | NC_005905.1 | + | 19513 | 0.77 | 0.251336 |
Target: 5'- aGGcCGGCUUGGaCCAAGCUAGCc--- -3' miRNA: 3'- -CCaGCCGAACCcGGUUCGAUCGaagc -5' |
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28304 | 3' | -55.2 | NC_005905.1 | + | 17572 | 0.79 | 0.189463 |
Target: 5'- --cCGGCUUaGGCCGAGUUAGCUUUGa -3' miRNA: 3'- ccaGCCGAAcCCGGUUCGAUCGAAGC- -5' |
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28304 | 3' | -55.2 | NC_005905.1 | + | 17352 | 0.79 | 0.189463 |
Target: 5'- --cCGGCUUaGGCCGAGUUAGCUUUGa -3' miRNA: 3'- ccaGCCGAAcCCGGUUCGAUCGAAGC- -5' |
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28304 | 3' | -55.2 | NC_005905.1 | + | 17462 | 0.79 | 0.189463 |
Target: 5'- --cCGGCUUaGGCCGAGUUAGCUUUGa -3' miRNA: 3'- ccaGCCGAAcCCGGUUCGAUCGAAGC- -5' |
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28304 | 3' | -55.2 | NC_005905.1 | + | 22166 | 0.8 | 0.17694 |
Target: 5'- gGGUCGaaugagucgaggccuGCUUuGGCCAAGUUAGCUUCGa -3' miRNA: 3'- -CCAGC---------------CGAAcCCGGUUCGAUCGAAGC- -5' |
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28304 | 3' | -55.2 | NC_005905.1 | + | 21836 | 0.8 | 0.170506 |
Target: 5'- aGGcCGGCUUGaaCCAAGUUAGCUUCGa -3' miRNA: 3'- -CCaGCCGAACccGGUUCGAUCGAAGC- -5' |
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28304 | 3' | -55.2 | NC_005905.1 | + | 8909 | 0.84 | 0.088687 |
Target: 5'- --cCGGCUUGGGCaGAGUUAGCUUCGa -3' miRNA: 3'- ccaGCCGAACCCGgUUCGAUCGAAGC- -5' |
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28304 | 3' | -55.2 | NC_005905.1 | + | 17857 | 0.85 | 0.079324 |
Target: 5'- -cUCGGCUUGuGCCGAGUUAGCUUCGa -3' miRNA: 3'- ccAGCCGAACcCGGUUCGAUCGAAGC- -5' |
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28304 | 3' | -55.2 | NC_005905.1 | + | 17924 | 0.85 | 0.077136 |
Target: 5'- aGUcCGGUUUGGGCCAAGCUAGCUcUGa -3' miRNA: 3'- cCA-GCCGAACCCGGUUCGAUCGAaGC- -5' |
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28304 | 3' | -55.2 | NC_005905.1 | + | 22061 | 0.87 | 0.056588 |
Target: 5'- aGGcCGGCUUGaGCCAAGUUAGCUUCGa -3' miRNA: 3'- -CCaGCCGAACcCGGUUCGAUCGAAGC- -5' |
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28304 | 3' | -55.2 | NC_005905.1 | + | 21791 | 0.88 | 0.049105 |
Target: 5'- aGGcCGGCUUuGGCCAAGUUAGCUUCGa -3' miRNA: 3'- -CCaGCCGAAcCCGGUUCGAUCGAAGC- -5' |
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28304 | 3' | -55.2 | NC_005905.1 | + | 17639 | 0.91 | 0.028524 |
Target: 5'- aGGcCGGCUUGGaCCAAGCUAGCUUCGa -3' miRNA: 3'- -CCaGCCGAACCcGGUUCGAUCGAAGC- -5' |
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28304 | 3' | -55.2 | NC_005905.1 | + | 8951 | 0.91 | 0.028524 |
Target: 5'- aGGcCGGCUUGaGCCAAGCUAGCUUCGa -3' miRNA: 3'- -CCaGCCGAACcCGGUUCGAUCGAAGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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