miRNA display CGI


Results 1 - 20 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28323 5' -52.5 NC_005905.1 + 21764 0.66 0.920595
Target:  5'- -aCGAAGCUucGACguguucagCGaGUAUAGGCCGGc -3'
miRNA:   3'- caGCUUCGA--UUGa-------GC-CGUGUUCGGCU- -5'
28323 5' -52.5 NC_005905.1 + 9234 0.66 0.908075
Target:  5'- -----uGCUAACUCuGCcCAAGCCGGg -3'
miRNA:   3'- cagcuuCGAUUGAGcCGuGUUCGGCU- -5'
28323 5' -52.5 NC_005905.1 + 17868 0.7 0.742249
Target:  5'- aUCGAGuuUAGCUCGGCuuguGCCGAg -3'
miRNA:   3'- cAGCUUcgAUUGAGCCGuguuCGGCU- -5'
28323 5' -52.5 NC_005905.1 + 17027 0.7 0.731794
Target:  5'- ------aCUAACUCGGCuCAAGCCGGg -3'
miRNA:   3'- cagcuucGAUUGAGCCGuGUUCGGCU- -5'
28323 5' -52.5 NC_005905.1 + 17810 0.72 0.656465
Target:  5'- uGUCaGAGCUAGCUUGGCcCAAaCCGGa -3'
miRNA:   3'- -CAGcUUCGAUUGAGCCGuGUUcGGCU- -5'
28323 5' -52.5 NC_005905.1 + 49107 0.76 0.407253
Target:  5'- aUCGAGGCUcGgUUGGCuCAAGCCGGu -3'
miRNA:   3'- cAGCUUCGAuUgAGCCGuGUUCGGCU- -5'
28323 5' -52.5 NC_005905.1 + 49152 0.76 0.407253
Target:  5'- aUCGAGGCUcGgUUGGCuCAAGCCGGu -3'
miRNA:   3'- cAGCUUCGAuUgAGCCGuGUUCGGCU- -5'
28323 5' -52.5 NC_005905.1 + 48972 0.76 0.407253
Target:  5'- aUCGAGGCUcGgUUGGCuCAAGCCGGu -3'
miRNA:   3'- cAGCUUCGAuUgAGCCGuGUUCGGCU- -5'
28323 5' -52.5 NC_005905.1 + 49242 0.76 0.407253
Target:  5'- aUUGAGGCUcGgUCGGCuCAAGCCGGu -3'
miRNA:   3'- cAGCUUCGAuUgAGCCGuGUUCGGCU- -5'
28323 5' -52.5 NC_005905.1 + 49017 0.76 0.407253
Target:  5'- aUCGAGGCUcGgUUGGCuCAAGCCGGu -3'
miRNA:   3'- cAGCUUCGAuUgAGCCGuGUUCGGCU- -5'
28323 5' -52.5 NC_005905.1 + 19399 0.76 0.389062
Target:  5'- aUCcAGGCUAGCUUGGUcCAAGCCGGc -3'
miRNA:   3'- cAGcUUCGAUUGAGCCGuGUUCGGCU- -5'
28323 5' -52.5 NC_005905.1 + 48928 0.77 0.354317
Target:  5'- -cCGAAGCUcGgUCGGCuCAAGCCGGu -3'
miRNA:   3'- caGCUUCGAuUgAGCCGuGUUCGGCU- -5'
28323 5' -52.5 NC_005905.1 + 49062 0.8 0.244142
Target:  5'- aUCGAGGCUcGgUCGGCuCAAGCCGGu -3'
miRNA:   3'- cAGCUUCGAuUgAGCCGuGUUCGGCU- -5'
28323 5' -52.5 NC_005905.1 + 49197 0.8 0.244142
Target:  5'- aUCGAGGCUcGgUCGGCuCAAGCCGGu -3'
miRNA:   3'- cAGCUUCGAuUgAGCCGuGUUCGGCU- -5'
28323 5' -52.5 NC_005905.1 + 49287 0.8 0.244142
Target:  5'- aUCGAGGCUcGgUCGGCuCAAGCCGGu -3'
miRNA:   3'- cAGCUUCGAuUgAGCCGuGUUCGGCU- -5'
28323 5' -52.5 NC_005905.1 + 49332 0.8 0.244142
Target:  5'- aUCGAGGCUcGgUCGGCuCAAGCCGGu -3'
miRNA:   3'- cAGCUUCGAuUgAGCCGuGUUCGGCU- -5'
28323 5' -52.5 NC_005905.1 + 8691 0.81 0.214311
Target:  5'- uGUCGAAGCUAAaUCGGUcCAAGCCGu -3'
miRNA:   3'- -CAGCUUCGAUUgAGCCGuGUUCGGCu -5'
28323 5' -52.5 NC_005905.1 + 21902 0.81 0.208733
Target:  5'- cGUCGAAGCUAACUUGGUuCAAaCCGAa -3'
miRNA:   3'- -CAGCUUCGAUUGAGCCGuGUUcGGCU- -5'
28323 5' -52.5 NC_005905.1 + 21991 0.82 0.187662
Target:  5'- cGUCGAAGCUAACUUGGCcCAAaCCGGc -3'
miRNA:   3'- -CAGCUUCGAUUGAGCCGuGUUcGGCU- -5'
28323 5' -52.5 NC_005905.1 + 19553 0.83 0.159572
Target:  5'- uGUCGAAGCUAGCUUGGCcCAAGaCGAc -3'
miRNA:   3'- -CAGCUUCGAUUGAGCCGuGUUCgGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.