miRNA display CGI


Results 1 - 20 of 106 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28324 3' -57.2 NC_005905.1 + 8672 0.66 0.701084
Target:  5'- -aGGUUUaucGaGUCCAGcCCGGCUUGGGCc -3'
miRNA:   3'- gaUCGAA---C-CGGGUUcGGCCGAACCUG- -5'
28324 3' -57.2 NC_005905.1 + 49246 0.66 0.679926
Target:  5'- -aGGCUcggucGGCUCAAGCCGGUcuaGACu -3'
miRNA:   3'- gaUCGAa----CCGGGUUCGGCCGaacCUG- -5'
28324 3' -57.2 NC_005905.1 + 17913 0.66 0.676735
Target:  5'- uUAGCuUUGacgaguuuuacauaGUCUAGGCUGGCUUGGGa -3'
miRNA:   3'- gAUCG-AAC--------------CGGGUUCGGCCGAACCUg -5'
28324 3' -57.2 NC_005905.1 + 17241 0.66 0.669277
Target:  5'- -cGGCUUGGgCCGAGUUaGCUUcGACa -3'
miRNA:   3'- gaUCGAACCgGGUUCGGcCGAAcCUG- -5'
28324 3' -57.2 NC_005905.1 + 17197 0.66 0.669277
Target:  5'- uUGGCUUGGgCCAAGCUaGCUUcaACa -3'
miRNA:   3'- gAUCGAACCgGGUUCGGcCGAAccUG- -5'
28324 3' -57.2 NC_005905.1 + 20202 0.67 0.637171
Target:  5'- -cAGCguaucGaGUCCAGaCCGGCUUGGGCc -3'
miRNA:   3'- gaUCGaa---C-CGGGUUcGGCCGAACCUG- -5'
28324 3' -57.2 NC_005905.1 + 22289 0.67 0.615729
Target:  5'- -cGGCUUGGCCCAAcaUGGUUUG-ACu -3'
miRNA:   3'- gaUCGAACCGGGUUcgGCCGAACcUG- -5'
28324 3' -57.2 NC_005905.1 + 8891 0.67 0.605024
Target:  5'- -aGGUUUaucGaGUCCAGcCCGGCUUGGGCa -3'
miRNA:   3'- gaUCGAA---C-CGGGUUcGGCCGAACCUG- -5'
28324 3' -57.2 NC_005905.1 + 21998 0.68 0.583689
Target:  5'- gCUAaCUUGGCCCAAaCCGGCcuaGACu -3'
miRNA:   3'- -GAUcGAACCGGGUUcGGCCGaacCUG- -5'
28324 3' -57.2 NC_005905.1 + 22056 0.68 0.556191
Target:  5'- -aAGCa-GGCCucgacucauucgaccCAAGCCGGCcUGGGCu -3'
miRNA:   3'- gaUCGaaCCGG---------------GUUCGGCCGaACCUG- -5'
28324 3' -57.2 NC_005905.1 + 21952 0.69 0.510599
Target:  5'- -aAGCUacuUGGCUCAAGCCGGCc----- -3'
miRNA:   3'- gaUCGA---ACCGGGUUCGGCCGaaccug -5'
28324 3' -57.2 NC_005905.1 + 21729 0.7 0.470556
Target:  5'- gCUAaCUUGGUUCAAGCCGGCcuaGACu -3'
miRNA:   3'- -GAUcGAACCGGGUUCGGCCGaacCUG- -5'
28324 3' -57.2 NC_005905.1 + 11738 0.7 0.460794
Target:  5'- -gAGUUUGccgaGUCCAGaCCGGCUUGGGCc -3'
miRNA:   3'- gaUCGAAC----CGGGUUcGGCCGAACCUG- -5'
28324 3' -57.2 NC_005905.1 + 11283 0.7 0.460794
Target:  5'- -gAGUUUGccgaGUCCAGaCCGGCUUGGGCc -3'
miRNA:   3'- gaUCGAAC----CGGGUUcGGCCGAACCUG- -5'
28324 3' -57.2 NC_005905.1 + 11153 0.7 0.460794
Target:  5'- -gAGUUUGccgaGUCCAGaCCGGCUUGGGCc -3'
miRNA:   3'- gaUCGAAC----CGGGUUcGGCCGAACCUG- -5'
28324 3' -57.2 NC_005905.1 + 11478 0.7 0.460794
Target:  5'- -gAGUUUGccgaGUCCAGaCCGGCUUGGGCc -3'
miRNA:   3'- gaUCGAAC----CGGGUUcGGCCGAACCUG- -5'
28324 3' -57.2 NC_005905.1 + 11543 0.7 0.460794
Target:  5'- -gAGUUUGccgaGUCCAGaCCGGCUUGGGCc -3'
miRNA:   3'- gaUCGAAC----CGGGUUcGGCCGAACCUG- -5'
28324 3' -57.2 NC_005905.1 + 11608 0.7 0.460794
Target:  5'- -gAGUUUGccgaGUCCAGaCCGGCUUGGGCc -3'
miRNA:   3'- gaUCGAAC----CGGGUUcGGCCGAACCUG- -5'
28324 3' -57.2 NC_005905.1 + 11803 0.7 0.460794
Target:  5'- -gAGUUUGccgaGUCCAGaCCGGCUUGGGCc -3'
miRNA:   3'- gaUCGAAC----CGGGUUcGGCCGAACCUG- -5'
28324 3' -57.2 NC_005905.1 + 11218 0.7 0.460794
Target:  5'- -gAGUUUGccgaGUCCAGaCCGGCUUGGGCc -3'
miRNA:   3'- gaUCGAAC----CGGGUUcGGCCGAACCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.