miRNA display CGI


Results 1 - 20 of 99 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28325 5' -59.4 NC_005905.1 + 21636 0.66 0.595938
Target:  5'- --------cGGCUCAAGCCGGCCUa- -3'
miRNA:   3'- ccgaucgaaCCGGGUUCGGCCGGAcc -5'
28325 5' -59.4 NC_005905.1 + 17911 0.66 0.582465
Target:  5'- aGUUAGCUuUGacgaguuuuacauaGUCUAGGCUGGCUUGGg -3'
miRNA:   3'- cCGAUCGA-AC--------------CGGGUUCGGCCGGACC- -5'
28325 5' -59.4 NC_005905.1 + 21865 0.67 0.561865
Target:  5'- aGUUAGCUUcgacgaguuuuaccGaGUCUAGGCCGGCUUGa -3'
miRNA:   3'- cCGAUCGAA--------------C-CGGGUUCGGCCGGACc -5'
28325 5' -59.4 NC_005905.1 + 48932 0.67 0.534387
Target:  5'- aGCUcGgUcGGCUCAAGCCGGUCUa- -3'
miRNA:   3'- cCGAuCgAaCCGGGUUCGGCCGGAcc -5'
28325 5' -59.4 NC_005905.1 + 17843 0.68 0.501479
Target:  5'- aGUUAGCUUcgacaaauuuuaucGaGUUUAGGCCGGCUUGGg -3'
miRNA:   3'- cCGAUCGAA--------------C-CGGGUUCGGCCGGACC- -5'
28325 5' -59.4 NC_005905.1 + 49336 0.68 0.494611
Target:  5'- aGGCUcGgUcGGCUCAAGCCGGUCc-- -3'
miRNA:   3'- -CCGAuCgAaCCGGGUUCGGCCGGacc -5'
28325 5' -59.4 NC_005905.1 + 22135 0.68 0.491681
Target:  5'- aGUUAGCUUcgacaaauuuuaucGaGUCUAGGCCGGUUUGGg -3'
miRNA:   3'- cCGAUCGAA--------------C-CGGGUUCGGCCGGACC- -5'
28325 5' -59.4 NC_005905.1 + 17654 0.69 0.456239
Target:  5'- aGGUUuaucgaGUCCAGGCCGGCUUGGa -3'
miRNA:   3'- -CCGAucgaacCGGGUUCGGCCGGACC- -5'
28325 5' -59.4 NC_005905.1 + 22181 0.69 0.456239
Target:  5'- ---------aGCCCAGGCCGGCUUGGg -3'
miRNA:   3'- ccgaucgaacCGGGUUCGGCCGGACC- -5'
28325 5' -59.4 NC_005905.1 + 20142 0.69 0.437662
Target:  5'- aGGUUuaucgaGUCCAGGCCGGCUUGGg -3'
miRNA:   3'- -CCGAucgaacCGGGUUCGGCCGGACC- -5'
28325 5' -59.4 NC_005905.1 + 19792 0.69 0.437662
Target:  5'- aGGUUuaucgaGUCCAGGCCGGCUUGGg -3'
miRNA:   3'- -CCGAucgaacCGGGUUCGGCCGGACC- -5'
28325 5' -59.4 NC_005905.1 + 17719 0.69 0.437662
Target:  5'- aGGUUuaucgaGUCCAGGCCGGCUUGGg -3'
miRNA:   3'- -CCGAucgaacCGGGUUCGGCCGGACC- -5'
28325 5' -59.4 NC_005905.1 + 19902 0.69 0.437662
Target:  5'- aGGUUuaucgaGUCCAGGCCGGCUUGGg -3'
miRNA:   3'- -CCGAucgaacCGGGUUCGGCCGGACC- -5'
28325 5' -59.4 NC_005905.1 + 8781 0.69 0.437662
Target:  5'- aGGUUuaucgaGUCCAGGCCGGCUUGGg -3'
miRNA:   3'- -CCGAucgaacCGGGUUCGGCCGGACC- -5'
28325 5' -59.4 NC_005905.1 + 9000 0.69 0.437662
Target:  5'- aGGUUuaucgaGUCCAGGCCGGCUUGGg -3'
miRNA:   3'- -CCGAucgaacCGGGUUCGGCCGGACC- -5'
28325 5' -59.4 NC_005905.1 + 19967 0.69 0.437662
Target:  5'- aGGUUuaucgaGUCCAGGCCGGCUUGGg -3'
miRNA:   3'- -CCGAucgaacCGGGUUCGGCCGGACC- -5'
28325 5' -59.4 NC_005905.1 + 20046 0.69 0.434913
Target:  5'- aGCUAGCUUcgacaaauuuuaucGaGUCCAGaCCGGCUUGGg -3'
miRNA:   3'- cCGAUCGAA--------------C-CGGGUUcGGCCGGACC- -5'
28325 5' -59.4 NC_005905.1 + 19871 0.69 0.434913
Target:  5'- aGCUAGCUUcgacaaauuuuaucGaGUCCAGaCCGGCUUGGg -3'
miRNA:   3'- cCGAUCGAA--------------C-CGGGUUcGGCCGGACC- -5'
28325 5' -59.4 NC_005905.1 + 19651 0.69 0.434913
Target:  5'- aGCUAGCUUcgacaaauuuuaucGaGUCCAGaCCGGCUUGGg -3'
miRNA:   3'- cCGAUCGAA--------------C-CGGGUUcGGCCGGACC- -5'
28325 5' -59.4 NC_005905.1 + 8703 0.69 0.407986
Target:  5'- aGCUAGCUUcgacaaauuuuaccGaGUCCAAaCCGGCUUGGg -3'
miRNA:   3'- cCGAUCGAA--------------C-CGGGUUcGGCCGGACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.