miRNA display CGI


Results 1 - 20 of 88 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28326 3' -50.7 NC_005905.1 + 9032 0.66 0.967284
Target:  5'- gCUAGCUUcgacaaauuuuaccGaGUcCAGGUCGGCUUGGGCc -3'
miRNA:   3'- -GAUUGAA--------------C-CAaGUUCGGCCGGAUCUG- -5'
28326 3' -50.7 NC_005905.1 + 19739 0.66 0.957202
Target:  5'- ------cGaGUcCAGGCCGGCUUGGGCc -3'
miRNA:   3'- gauugaaC-CAaGUUCGGCCGGAUCUG- -5'
28326 3' -50.7 NC_005905.1 + 17092 0.66 0.952982
Target:  5'- gCUAGCUUGGccCAAGCCaaCCUGGuCu -3'
miRNA:   3'- -GAUUGAACCaaGUUCGGccGGAUCuG- -5'
28326 3' -50.7 NC_005905.1 + 17202 0.66 0.952982
Target:  5'- gCUAGCUUGGccCAAGCCaaCCUGGuCu -3'
miRNA:   3'- -GAUUGAACCaaGUUCGGccGGAUCuG- -5'
28326 3' -50.7 NC_005905.1 + 17312 0.66 0.952982
Target:  5'- gCUAGCUUGGccCAAGCCaaCCUGGuCu -3'
miRNA:   3'- -GAUUGAACCaaGUUCGGccGGAUCuG- -5'
28326 3' -50.7 NC_005905.1 + 17422 0.66 0.952982
Target:  5'- gCUAGCUUGGccCAAGCCaaCCUGGuCu -3'
miRNA:   3'- -GAUUGAACCaaGUUCGGccGGAUCuG- -5'
28326 3' -50.7 NC_005905.1 + 17797 0.67 0.95032
Target:  5'- gCUAGCUUcGacaaauuuuaucgaaUcCAGGCCGGCUUGGACc -3'
miRNA:   3'- -GAUUGAAcC---------------AaGUUCGGCCGGAUCUG- -5'
28326 3' -50.7 NC_005905.1 + 17527 0.67 0.943723
Target:  5'- uUGGCUUGGgcCAAGCUaGCUUcGACa -3'
miRNA:   3'- gAUUGAACCaaGUUCGGcCGGAuCUG- -5'
28326 3' -50.7 NC_005905.1 + 17417 0.67 0.943723
Target:  5'- uUGGCUUGGgcCAAGCUaGCUUcGACa -3'
miRNA:   3'- gAUUGAACCaaGUUCGGcCGGAuCUG- -5'
28326 3' -50.7 NC_005905.1 + 17307 0.67 0.943723
Target:  5'- uUGGCUUGGgcCAAGCUaGCUUcGACa -3'
miRNA:   3'- gAUUGAACCaaGUUCGGcCGGAuCUG- -5'
28326 3' -50.7 NC_005905.1 + 22187 0.67 0.927737
Target:  5'- -cAugUUGGgcCAAGCCGGUUUAaauacGACa -3'
miRNA:   3'- gaUugAACCaaGUUCGGCCGGAU-----CUG- -5'
28326 3' -50.7 NC_005905.1 + 8595 0.68 0.893292
Target:  5'- uUAGCUUcgacaaauuuuaccGuGUcCAGGCCGGCUUGGGCc -3'
miRNA:   3'- gAUUGAA--------------C-CAaGUUCGGCCGGAUCUG- -5'
28326 3' -50.7 NC_005905.1 + 19560 0.69 0.872787
Target:  5'- gCUAGCUUGGccCAAGaCGaCCUGGACu -3'
miRNA:   3'- -GAUUGAACCaaGUUCgGCcGGAUCUG- -5'
28326 3' -50.7 NC_005905.1 + 17817 0.7 0.839032
Target:  5'- gCUAGCUUGGccCAAaCCGGaCUGGACu -3'
miRNA:   3'- -GAUUGAACCaaGUUcGGCCgGAUCUG- -5'
28326 3' -50.7 NC_005905.1 + 49336 0.7 0.830014
Target:  5'- -aGGCUcGGUcggcUCAAGCCGGUCcAGAUu -3'
miRNA:   3'- gaUUGAaCCA----AGUUCGGCCGGaUCUG- -5'
28326 3' -50.7 NC_005905.1 + 20183 0.7 0.820782
Target:  5'- -cGGCUUGGgcCAAGCUaGCCUcGACa -3'
miRNA:   3'- gaUUGAACCaaGUUCGGcCGGAuCUG- -5'
28326 3' -50.7 NC_005905.1 + 21636 0.7 0.811347
Target:  5'- ------cGGcUCAAGCCGGCCUAuACu -3'
miRNA:   3'- gauugaaCCaAGUUCGGCCGGAUcUG- -5'
28326 3' -50.7 NC_005905.1 + 8776 0.71 0.801719
Target:  5'- -aGAUUaGGUUuaucgagucCAGGCCGGCUUGGGCc -3'
miRNA:   3'- gaUUGAaCCAA---------GUUCGGCCGGAUCUG- -5'
28326 3' -50.7 NC_005905.1 + 17724 0.71 0.801719
Target:  5'- -aGAUUaGGUUuaucgagucCAGGCCGGCUUGGGCc -3'
miRNA:   3'- gaUUGAaCCAA---------GUUCGGCCGGAUCUG- -5'
28326 3' -50.7 NC_005905.1 + 8995 0.71 0.801719
Target:  5'- -aGAUUaGGUUuaucgagucCAGGCCGGCUUGGGCc -3'
miRNA:   3'- gaUUGAaCCAA---------GUUCGGCCGGAUCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.