miRNA display CGI


Results 1 - 20 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2871 5' -55.9 NC_001493.1 + 14905 0.66 0.921173
Target:  5'- --gGGGCagggGGGAAGGGCUUCGCCg- -3'
miRNA:   3'- gagCCUGag--CCCUUCUUGGAGUGGgg -5'
2871 5' -55.9 NC_001493.1 + 130459 0.66 0.921173
Target:  5'- --gGGGCagggGGGAAGGGCUUCGCCg- -3'
miRNA:   3'- gagCCUGag--CCCUUCUUGGAGUGGgg -5'
2871 5' -55.9 NC_001493.1 + 85540 0.66 0.921173
Target:  5'- -aUGGACUCGGugauugGAAGGGCCgUGCCgCg -3'
miRNA:   3'- gaGCCUGAGCC------CUUCUUGGaGUGGgG- -5'
2871 5' -55.9 NC_001493.1 + 95602 0.66 0.921173
Target:  5'- -cCGGGCgagagaCGGGugguGGACCUC-CCCg -3'
miRNA:   3'- gaGCCUGa-----GCCCuu--CUUGGAGuGGGg -5'
2871 5' -55.9 NC_001493.1 + 62391 0.66 0.921173
Target:  5'- uCUUGGguuugugaccGCcCGGu--GGACCUCGCCCCc -3'
miRNA:   3'- -GAGCC----------UGaGCCcuuCUUGGAGUGGGG- -5'
2871 5' -55.9 NC_001493.1 + 30503 0.66 0.921173
Target:  5'- uCUCGGuCUgucCGGGgcGAucccccuuGCCgucaaCGCCCCg -3'
miRNA:   3'- -GAGCCuGA---GCCCuuCU--------UGGa----GUGGGG- -5'
2871 5' -55.9 NC_001493.1 + 121092 0.66 0.915507
Target:  5'- -cCGGACUugggCGGGAGGAGCga-GCCgCg -3'
miRNA:   3'- gaGCCUGA----GCCCUUCUUGgagUGGgG- -5'
2871 5' -55.9 NC_001493.1 + 44183 0.66 0.915507
Target:  5'- uUCGGGCcCuGGggGAGCCgaUCAgCCg -3'
miRNA:   3'- gAGCCUGaGcCCuuCUUGG--AGUgGGg -5'
2871 5' -55.9 NC_001493.1 + 5537 0.66 0.915507
Target:  5'- -cCGGACUugggCGGGAGGAGCga-GCCgCg -3'
miRNA:   3'- gaGCCUGA----GCCCUUCUUGgagUGGgG- -5'
2871 5' -55.9 NC_001493.1 + 19167 0.66 0.915507
Target:  5'- gCUCGcGGCgCGGGAggugGGGAUCggUCGCUCCc -3'
miRNA:   3'- -GAGC-CUGaGCCCU----UCUUGG--AGUGGGG- -5'
2871 5' -55.9 NC_001493.1 + 29003 0.66 0.915507
Target:  5'- cCUCGGACUUGGuaaccGAGCuCUUACCgagCCg -3'
miRNA:   3'- -GAGCCUGAGCCcuu--CUUG-GAGUGG---GG- -5'
2871 5' -55.9 NC_001493.1 + 119214 0.66 0.911994
Target:  5'- cCUCGGGCgacucaaCGGGGaucccgaacggaaggGGGAgUUCACCgCCg -3'
miRNA:   3'- -GAGCCUGa------GCCCU---------------UCUUgGAGUGG-GG- -5'
2871 5' -55.9 NC_001493.1 + 3660 0.66 0.911994
Target:  5'- cCUCGGGCgacucaaCGGGGaucccgaacggaaggGGGAgUUCACCgCCg -3'
miRNA:   3'- -GAGCCUGa------GCCCU---------------UCUUgGAGUGG-GG- -5'
2871 5' -55.9 NC_001493.1 + 78309 0.66 0.909605
Target:  5'- -aCGGGCgUCGuGGggGAACCUCcgaaGCauugcacgggggCCCa -3'
miRNA:   3'- gaGCCUG-AGC-CCuuCUUGGAG----UG------------GGG- -5'
2871 5' -55.9 NC_001493.1 + 112564 0.66 0.903469
Target:  5'- cCUCGauCUCGGucGGGAACCUCACaCCg -3'
miRNA:   3'- -GAGCcuGAGCCc-UUCUUGGAGUGgGG- -5'
2871 5' -55.9 NC_001493.1 + 89407 0.66 0.903469
Target:  5'- -cCGGGgggagaaguguCUCGGGcccGAugCUCGCCCg -3'
miRNA:   3'- gaGCCU-----------GAGCCCuu-CUugGAGUGGGg -5'
2871 5' -55.9 NC_001493.1 + 5667 0.66 0.897101
Target:  5'- gUCGGAgaCGGGAgaguacaucGGAGCCggguUCACCg- -3'
miRNA:   3'- gAGCCUgaGCCCU---------UCUUGG----AGUGGgg -5'
2871 5' -55.9 NC_001493.1 + 121222 0.66 0.897101
Target:  5'- gUCGGAgaCGGGAgaguacaucGGAGCCggguUCACCg- -3'
miRNA:   3'- gAGCCUgaGCCCU---------UCUUGG----AGUGGgg -5'
2871 5' -55.9 NC_001493.1 + 46484 0.66 0.896452
Target:  5'- uUCGGACcaucgUCGGGAacgggagAGGAgaUCACgCCCg -3'
miRNA:   3'- gAGCCUG-----AGCCCU-------UCUUggAGUG-GGG- -5'
2871 5' -55.9 NC_001493.1 + 82297 0.66 0.890505
Target:  5'- cCUCGcaugaGCUCcaccuGGAAGAccucgaGCCUCAUCCCa -3'
miRNA:   3'- -GAGCc----UGAGc----CCUUCU------UGGAGUGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.