miRNA display CGI


Results 1 - 20 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28726 3' -57.9 NC_006146.1 + 170175 0.69 0.654416
Target:  5'- gGGGCUGagGGGgcucccgagggcgGGGccGGGGCCUGGCg- -3'
miRNA:   3'- -CUUGACagCCU-------------UCC--UCCCGGACCGag -5'
28726 3' -57.9 NC_006146.1 + 170055 0.66 0.834448
Target:  5'- ---aUGUCGG--GGAGGGCCcggGGC-Cg -3'
miRNA:   3'- cuugACAGCCuuCCUCCCGGa--CCGaG- -5'
28726 3' -57.9 NC_006146.1 + 169244 0.69 0.654416
Target:  5'- gGGGCUGagGGGgcucccgagggcgGGGccGGGGCCUGGCg- -3'
miRNA:   3'- -CUUGACagCCU-------------UCC--UCCCGGACCGag -5'
28726 3' -57.9 NC_006146.1 + 169123 0.66 0.834448
Target:  5'- ---aUGUCGG--GGAGGGCCcggGGC-Cg -3'
miRNA:   3'- cuugACAGCCuuCCUCCCGGa--CCGaG- -5'
28726 3' -57.9 NC_006146.1 + 168604 1.08 0.002283
Target:  5'- gGAACUGUCGGAAGGAGGGCCUGGCUCc -3'
miRNA:   3'- -CUUGACAGCCUUCCUCCCGGACCGAG- -5'
28726 3' -57.9 NC_006146.1 + 168312 0.69 0.654416
Target:  5'- gGGGCUGagGGGgcucccgagggcgGGGccGGGGCCUGGCg- -3'
miRNA:   3'- -CUUGACagCCU-------------UCC--UCCCGGACCGag -5'
28726 3' -57.9 NC_006146.1 + 168191 0.66 0.834448
Target:  5'- ---aUGUCGG--GGAGGGCCcggGGC-Cg -3'
miRNA:   3'- cuugACAGCCuuCCUCCCGGa--CCGaG- -5'
28726 3' -57.9 NC_006146.1 + 167380 0.69 0.654416
Target:  5'- gGGGCUGagGGGgcucccgagggcgGGGccGGGGCCUGGCg- -3'
miRNA:   3'- -CUUGACagCCU-------------UCC--UCCCGGACCGag -5'
28726 3' -57.9 NC_006146.1 + 167259 0.66 0.834448
Target:  5'- ---aUGUCGG--GGAGGGCCcggGGC-Cg -3'
miRNA:   3'- cuugACAGCCuuCCUCCCGGa--CCGaG- -5'
28726 3' -57.9 NC_006146.1 + 156840 0.7 0.614902
Target:  5'- gGGAgUGgccagggaGGAcGGAGGGCCUGGCc- -3'
miRNA:   3'- -CUUgACag------CCUuCCUCCCGGACCGag -5'
28726 3' -57.9 NC_006146.1 + 154881 0.75 0.34895
Target:  5'- aGAGCccGUCGGggGGcAGGGCCUcgcccgGGCUg -3'
miRNA:   3'- -CUUGa-CAGCCuuCC-UCCCGGA------CCGAg -5'
28726 3' -57.9 NC_006146.1 + 153762 0.7 0.614902
Target:  5'- gGGAgUGgccagggaGGAcGGAGGGCCUGGCc- -3'
miRNA:   3'- -CUUgACag------CCUuCCUCCCGGACCGag -5'
28726 3' -57.9 NC_006146.1 + 151896 0.67 0.79133
Target:  5'- gGAAC--UCGaGggGGcccccacuGGGGUCUGGCUCc -3'
miRNA:   3'- -CUUGacAGC-CuuCC--------UCCCGGACCGAG- -5'
28726 3' -57.9 NC_006146.1 + 150685 0.69 0.665533
Target:  5'- gGGAgUGgccaggGGGAcGGAGGGCCUGGCc- -3'
miRNA:   3'- -CUUgACag----CCUU-CCUCCCGGACCGag -5'
28726 3' -57.9 NC_006146.1 + 150501 0.69 0.665533
Target:  5'- --cCUGUCGGAGgcGGAGGGCaugGGUa- -3'
miRNA:   3'- cuuGACAGCCUU--CCUCCCGga-CCGag -5'
28726 3' -57.9 NC_006146.1 + 149963 0.66 0.84256
Target:  5'- aGGC-GUUGGGAGuGGGGGCCagGGCc- -3'
miRNA:   3'- cUUGaCAGCCUUC-CUCCCGGa-CCGag -5'
28726 3' -57.9 NC_006146.1 + 147607 0.7 0.614902
Target:  5'- gGGAgUGgccagggaGGAcGGAGGGCCUGGCc- -3'
miRNA:   3'- -CUUgACag------CCUuCCUCCCGGACCGag -5'
28726 3' -57.9 NC_006146.1 + 144529 0.7 0.614902
Target:  5'- gGGAgUGgccagggaGGAcGGAGGGCCUGGCc- -3'
miRNA:   3'- -CUUgACag------CCUuCCUCCCGGACCGag -5'
28726 3' -57.9 NC_006146.1 + 141451 0.7 0.614902
Target:  5'- gGGAgUGgccagggaGGAcGGAGGGCCUGGCc- -3'
miRNA:   3'- -CUUgACag------CCUuCCUCCCGGACCGag -5'
28726 3' -57.9 NC_006146.1 + 137770 0.67 0.763705
Target:  5'- -cGCUGgucCGGuccGGGuGGGCCUGGUcCg -3'
miRNA:   3'- cuUGACa--GCCu--UCCuCCCGGACCGaG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.