miRNA display CGI


Results 1 - 20 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28726 3' -57.9 NC_006146.1 + 114343 0.7 0.635169
Target:  5'- --cCUGaCGGAGGuggacGGGGGCCUGGCcCg -3'
miRNA:   3'- cuuGACaGCCUUC-----CUCCCGGACCGaG- -5'
28726 3' -57.9 NC_006146.1 + 43996 0.67 0.791329
Target:  5'- aGGCUGaguaggcCGGAgguggaugugGGGAGGGUCUuuuGGCUCa -3'
miRNA:   3'- cUUGACa------GCCU----------UCCUCCCGGA---CCGAG- -5'
28726 3' -57.9 NC_006146.1 + 39967 0.67 0.78225
Target:  5'- cGGCUGg-GGAAGGAGaGGCUgaGGCUg -3'
miRNA:   3'- cUUGACagCCUUCCUC-CCGGa-CCGAg -5'
28726 3' -57.9 NC_006146.1 + 132063 0.68 0.734079
Target:  5'- -cGCUGcUGGAcgugagcugccccAGGcucAGGGCCUGGCUg -3'
miRNA:   3'- cuUGACaGCCU-------------UCC---UCCCGGACCGAg -5'
28726 3' -57.9 NC_006146.1 + 89962 0.68 0.72531
Target:  5'- uGGAUUGUCaGAu---GGGCCUGGCUg -3'
miRNA:   3'- -CUUGACAGcCUuccuCCCGGACCGAg -5'
28726 3' -57.9 NC_006146.1 + 150685 0.69 0.665533
Target:  5'- gGGAgUGgccaggGGGAcGGAGGGCCUGGCc- -3'
miRNA:   3'- -CUUgACag----CCUU-CCUCCCGGACCGag -5'
28726 3' -57.9 NC_006146.1 + 112508 0.69 0.665533
Target:  5'- uAGCgGUCcaGGGGccgguGGAGGGCCUGGgUCa -3'
miRNA:   3'- cUUGaCAG--CCUU-----CCUCCCGGACCgAG- -5'
28726 3' -57.9 NC_006146.1 + 44760 0.69 0.655427
Target:  5'- cGGGCUcUCGGggGaGAGGguGCCgugccgGGCUCa -3'
miRNA:   3'- -CUUGAcAGCCuuC-CUCC--CGGa-----CCGAG- -5'
28726 3' -57.9 NC_006146.1 + 64240 0.69 0.655427
Target:  5'- --cCUGggcCGGGgcGGGAgGGGCgUGGCUCg -3'
miRNA:   3'- cuuGACa--GCCU--UCCU-CCCGgACCGAG- -5'
28726 3' -57.9 NC_006146.1 + 92227 0.66 0.816832
Target:  5'- -uGCUGcUGGggGGcGGGCCcggccugUGGCUg -3'
miRNA:   3'- cuUGACaGCCuuCCuCCCGG-------ACCGAg -5'
28726 3' -57.9 NC_006146.1 + 92018 0.66 0.817688
Target:  5'- -uGCUGcUGGggGGcGGGCCcGGCc- -3'
miRNA:   3'- cuUGACaGCCuuCCuCCCGGaCCGag -5'
28726 3' -57.9 NC_006146.1 + 92048 0.66 0.817688
Target:  5'- -uGCUGcUGGggGGcGGGCCcGGCc- -3'
miRNA:   3'- cuUGACaGCCuuCCuCCCGGaCCGag -5'
28726 3' -57.9 NC_006146.1 + 100009 0.66 0.84256
Target:  5'- gGAGCgggcacGUCGGGAGGcggcGGGGUCcgcGGCUUc -3'
miRNA:   3'- -CUUGa-----CAGCCUUCC----UCCCGGa--CCGAG- -5'
28726 3' -57.9 NC_006146.1 + 92317 0.66 0.817688
Target:  5'- -uGCUGcUGGggGGcGGGCCcGGCc- -3'
miRNA:   3'- cuUGACaGCCuuCCuCCCGGaCCGag -5'
28726 3' -57.9 NC_006146.1 + 92287 0.66 0.817688
Target:  5'- -uGCUGcUGGggGGcGGGCCcGGCc- -3'
miRNA:   3'- cuUGACaGCCuuCCuCCCGGaCCGag -5'
28726 3' -57.9 NC_006146.1 + 92257 0.66 0.817688
Target:  5'- -uGCUGcUGGggGGcGGGCCcGGCc- -3'
miRNA:   3'- cuUGACaGCCuuCCuCCCGGaCCGag -5'
28726 3' -57.9 NC_006146.1 + 92197 0.66 0.817688
Target:  5'- -uGCUGcUGGggGGcGGGCCcGGCc- -3'
miRNA:   3'- cuUGACaGCCuuCCuCCCGGaCCGag -5'
28726 3' -57.9 NC_006146.1 + 92167 0.66 0.817688
Target:  5'- -uGCUGcUGGggGGcGGGCCcGGCc- -3'
miRNA:   3'- cuUGACaGCCuuCCuCCCGGaCCGag -5'
28726 3' -57.9 NC_006146.1 + 92137 0.66 0.817688
Target:  5'- -uGCUGcUGGggGGcGGGCCcGGCc- -3'
miRNA:   3'- cuUGACaGCCuuCCuCCCGGaCCGag -5'
28726 3' -57.9 NC_006146.1 + 92107 0.66 0.817688
Target:  5'- -uGCUGcUGGggGGcGGGCCcGGCc- -3'
miRNA:   3'- cuUGACaGCCuuCCuCCCGGaCCGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.